Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1626 ATGGGGGATCTCATCTTCTCATTCAAGAACCAGGAACATGGTCACCATAGAGCAAGACACAACAAGAAGAGGCTAACTGAGGAGCAGGTTAGCATTCTTGAGAAATGCTTTGGTTCCAACATGAAGCTTGAACCGGAGCAGAAATTCCACCTTGCAAACCAACTTGGTGTTCCTCCAAGACAAGTTGCCATTTGGTACCAGAACAAAAGGGCACGCTGGAAGACTCAGAGCCTTGAGGTGGACCATGGTGTTCTTCAGGCAAAGCTGGAGAATGTGATGGCTGAGAAGAAGCAGCTGGAGAAAGATGTGGAAAGGCTCAAAGCTGAGCTCAAGAAAGCTCAAGAGATGATGCTGGTTGGAGATGTAGGCAAAGGTGGAGAACACAGTAATACTAGTAACAATAACAGTAACAACTATAATAATAATAATAATAATGGTTCTTGTGGTGAGTTTTCAACTTCTTTTGAAGAGGGAGGGAGTTCAGGGATGGTACTTGATGATGAAACTCGTCATCATGAGTGTTGGCAAAGTGGTGAGGTTATGCAGGTTGAGGAGCTCTATGCTTACTTCATGGGTGCAAATTATGGGTCAAGCTTGAATGAGAAAAGGGCATAA 615 0.439 MGDLIFSFKNQEHGHHRARHNKKRLTEEQVSILEKCFGSNMKLEPEQKFHLANQLGVPPRQVAIWYQNKRARWKTQSLEVDHGVLQAKLENVMAEKKQLEKDVERLKAELKKAQEMMLVGDVGKGGEHSNTSNNNSNNYNNNNNNGSCGEFSTSFEEGGSSGMVLDDETRHHECWQSGEVMQVEELYAYFMGANYGSSLNEKRA* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1626 204 ProSitePatterns 'Homeobox' domain signature. 51 74 IPR017970 GO:0000981|GO:0006355
Pvu11g1626 204 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-52 11 198 - -
Pvu11g1626 204 SUPERFAMILY Homeodomain-like 13 77 IPR009057 -
Pvu11g1626 204 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Pvu11g1626 204 Pfam Homeodomain 20 74 IPR001356 GO:0003677
Pvu11g1626 204 MobiDBLite consensus disorder prediction 126 145 - -
Pvu11g1626 204 SMART HOX_1 18 80 IPR001356 GO:0003677
Pvu11g1626 204 MobiDBLite consensus disorder prediction 122 145 - -
Pvu11g1626 204 CDD homeodomain 19 77 IPR001356 GO:0003677
Pvu11g1626 204 Gene3D - 14 81 - -
Pvu11g1626 204 Coils Coil 82 116 - -
Pvu11g1626 204 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 11 198 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1626 Pvu-Chr11 41290321 41290935 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1626 12 198 Homeobox Transcription Factor Family AT5G53980 39.572 3.64e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pvu11g1626 Homeodomain 5.5e-17 CL0123