Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1614 ATGTACTCTATGTTTGGCAGTCTCAAAGATGCGCAACATGTGTTTGATAAAATGCCTGAGAGTAATGAAGCTTCTTGGAACAACATGATGTCGGGGTTTGTTCGAGGAGGGTGGTACCATGAAGCAATGAAATTCTTCTGCAACATGCTTGAGCATGGTGTCAGGCCAAATAGTTATGTGGCTGCTAGTGTGGTGACTGCTTGTGATAGATCGGGGTGCATGGCTGAAGGGGCACTTCAGGTTCATGCCCTTGTGGTTAAATGTGGTTTGGTCAGTGACGTGTTTGTTGGCACGAGTTTGCTGCACTTTTATGGTACATGTGGTCGGGTTTCTGAGGTTGACAAACTCTTTCAAGAGATTGAGGAACCTAATATAGTGTCTTGGACTGCTTTGATGGTTGCTTATGCGTATAATGGGTGTTTAAAGGACGTTCTGAGTGTTTATCAGTGTTTGAGGCACAATGGGGTGTACTGTAATGAAAATGCAATGGCTACAGTTATTAGGTCTTGTGGGGTGCTTGGAGATAAGAAGTTGGGTTATCAGGTGTTTGGTAGTGTGGTCAAATCCGGACTGGATATTACTGTGTCTGTGGCGAACTCCCTTGTTTCCATGTTTGGTAATTGTGATAGCATAGAAGAGGCGTCTTGTGTGTTTGATGACATGAATGAACGTGACACTATTTCATGGAATTCGATAATTACTGCAAGTGTACATAATGGTCATTGTGAAGAATCTTTAGAATACTTTTCTCAGATGCGTTTTACTCACACAAAAACAGATTATATTACTATCTCAGCCATGTTACCAGTGTGTGGCTCTGCTCAAAATTTGAGGTGGGGAAGAGGGCTTCATGGTATGGTAGTAAAATCCGGACTGGAATCAAATGTTTGTGTATGCAATAGTCTTCTAAGTATGTATTCTCAGGCTGGAAAATCGGGGGATGCAGAGTTTGTATTTCATAGAATGCGTGAGAGAGATATAATTTCATGGAATTCCATGATGGCAAGTCATGTAGAGAATGGAAAGTATCCACGTGCCCTACAACTTTTGATTGAGATGCTCCAAACAAGAAAGGCGACGAACTATATGGTTCATACCTTTGTGATTCTTCTTGGTCTCCATTCCAATTTGATCATAGGTAATGCATTGGTTACCATGTATGGGAAATTTGGTTCGATGGCTGAAGCAAAACGGGTTTGCAAAATTATGCCTGAGAAAGATGAAGTAACGTGGAATGCACTAATAGGTGGACATGCTGATAACAAGGAAACCAATGCGGCAATTGAAGCCTTCAATTTGTTGAGAGAAGAAGGTGTAGCTGTAAACTATATTACCATTGTTAATCTTCTCACTCTTGCCATTATTGGTAACTTAACTTTACTGGATGAAGGTCAGCAGCTTCATAGTTTGATTATCAAACATGGGTTTGAGTCAAATGATTACGTGTTAAATGCAACAATGGATATGTATGGAAAATGTGGCGAAATTGATGATGTGTTCAGAATCCTTCCCCAACCAAGAAGCAGGTCACAGAGATCTTGGAACATTTTAATATCAGCTTTAGCCAGGCATGGTTTTTTCCAACAGGCTAGGGAAGCCTTTCATGAGATGCTTGATCTAGGACTGAGACCAGACCACGTCACTTTTGTTTCACTTTTGTCTGCATGCAGCCATGGGGGTTTGGTGGACGTGGGCCTTGCATACTTCTCTTCAATGTCTACCGAATTCTGTGTCCCCATTGGAATAGAGCATTGTGTATGCATAATTGACCTTCTTGGGCGAGCAGGAAGACTTGCTGAGGCTGAAAGTTTCATTAATAAGATGCCAGTTCCACCAAATGACCTTGTGTGGCGTACCCTGTTGGCTTCTTGTAAAATACATGGCAATTTGGAGCTTGCAAGGAAAGCTGCTGACCGCCTTTTCGAACTTGACTCATCAGATGATTCAGCCTATGTTCTTTACTCAAATGTCTGTGCATCAACTAGAAGATGGCGAGATATGGAGGATATACGAAAGCAAATGGAATCACACAACATAAAGAAGAAACCTGCCTGTAGTTGGATCAAGTTGAAAAGCCAGGTTACTACTTTCGGAATGGGTGACCAGTATCATCCACAAAATGCACAAATCTATGCAAAGTTGGAAGAACTCAAAAAGATCATTACTGAGGCAGGATATGTGCCTGATACTAGCTATTCATTGCAAGATACAGATGAAGAACAAAAGGAGCATAACCTTTGGAACCATAGTGAGAGAATTGCCCTTGCATTTGGGTTGATCAATAGCCCAGAAGGCTTGCCTCTTAGAATTTTTAAGAATCTCCGTGTCTGTGGTGATTGCCACTCTGTTTTCAAGATGGTTAGTCAAATAATTGGCAGGAAAATCATATTAAGGGATGCATACCGGTTTCACCATTTCAGTAATGGCATGTGCTCCTGTTTGGACTACTGGTAA 2454 0.4152 MYSMFGSLKDAQHVFDKMPESNEASWNNMMSGFVRGGWYHEAMKFFCNMLEHGVRPNSYVAASVVTACDRSGCMAEGALQVHALVVKCGLVSDVFVGTSLLHFYGTCGRVSEVDKLFQEIEEPNIVSWTALMVAYAYNGCLKDVLSVYQCLRHNGVYCNENAMATVIRSCGVLGDKKLGYQVFGSVVKSGLDITVSVANSLVSMFGNCDSIEEASCVFDDMNERDTISWNSIITASVHNGHCEESLEYFSQMRFTHTKTDYITISAMLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSGDAEFVFHRMRERDIISWNSMMASHVENGKYPRALQLLIEMLQTRKATNYMVHTFVILLGLHSNLIIGNALVTMYGKFGSMAEAKRVCKIMPEKDEVTWNALIGGHADNKETNAAIEAFNLLREEGVAVNYITIVNLLTLAIIGNLTLLDEGQQLHSLIIKHGFESNDYVLNATMDMYGKCGEIDDVFRILPQPRSRSQRSWNILISALARHGFFQQAREAFHEMLDLGLRPDHVTFVSLLSACSHGGLVDVGLAYFSSMSTEFCVPIGIEHCVCIIDLLGRAGRLAEAESFINKMPVPPNDLVWRTLLASCKIHGNLELARKAADRLFELDSSDDSAYVLYSNVCASTRRWRDMEDIRKQMESHNIKKKPACSWIKLKSQVTTFGMGDQYHPQNAQIYAKLEELKKIITEAGYVPDTSYSLQDTDEEQKEHNLWNHSERIALAFGLINSPEGLPLRIFKNLRVCGDCHSVFKMVSQIIGRKIILRDAYRFHHFSNGMCSCLDYW* 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1614 817 Gene3D Tetratricopeptide repeat domain 578 754 IPR011990 GO:0005515
Pvu11g1614 817 Gene3D Tetratricopeptide repeat domain 179 284 IPR011990 GO:0005515
Pvu11g1614 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 22 56 IPR002885 -
Pvu11g1614 817 PANTHER OS11G0680200 PROTEIN 1 91 - -
Pvu11g1614 817 PANTHER OS11G0680200 PROTEIN 185 402 - -
Pvu11g1614 817 PANTHER OS11G0680200 PROTEIN 403 803 - -
Pvu11g1614 817 PANTHER OS11G0680200 PROTEIN 88 190 - -
Pvu11g1614 817 PANTHER OS11G0680200 PROTEIN 371 447 - -
Pvu11g1614 817 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 185 402 - -
Pvu11g1614 817 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 91 - -
Pvu11g1614 817 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 371 447 - -
Pvu11g1614 817 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 88 190 - -
Pvu11g1614 817 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 403 803 - -
Pvu11g1614 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 510 544 IPR002885 -
Pvu11g1614 817 Pfam DYW family of nucleic acid deaminases 725 817 IPR032867 GO:0008270
Pvu11g1614 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Pvu11g1614 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Pvu11g1614 817 Gene3D Tetratricopeptide repeat domain 285 374 IPR011990 GO:0005515
Pvu11g1614 817 Gene3D Tetratricopeptide repeat domain 1 75 IPR011990 GO:0005515
Pvu11g1614 817 Pfam PPR repeat 227 253 IPR002885 -
Pvu11g1614 817 Pfam PPR repeat 381 406 IPR002885 -
Pvu11g1614 817 Pfam PPR repeat 587 608 IPR002885 -
Pvu11g1614 817 Pfam PPR repeat 126 156 IPR002885 -
Pvu11g1614 817 Pfam PPR repeat 199 224 IPR002885 -
Pvu11g1614 817 Pfam PPR repeat 328 354 IPR002885 -
Pvu11g1614 817 Pfam PPR repeat 409 439 IPR002885 -
Pvu11g1614 817 Pfam PPR repeat 98 122 IPR002885 -
Pvu11g1614 817 TIGRFAM PPR: pentatricopeptide repeat domain 25 57 IPR002885 -
Pvu11g1614 817 TIGRFAM PPR: pentatricopeptide repeat domain 298 327 IPR002885 -
Pvu11g1614 817 TIGRFAM PPR: pentatricopeptide repeat domain 513 545 IPR002885 -
Pvu11g1614 817 TIGRFAM PPR: pentatricopeptide repeat domain 409 442 IPR002885 -
Pvu11g1614 817 Pfam E motif 627 689 IPR046848 -
Pvu11g1614 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 545 579 IPR002885 -
Pvu11g1614 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Pvu11g1614 817 Pfam Pentatricopeptide repeat domain 287 327 IPR002885 -
Pvu11g1614 817 Pfam PPR repeat family 22 64 IPR002885 -
Pvu11g1614 817 Pfam PPR repeat family 513 557 IPR002885 -
Pvu11g1614 817 Gene3D Tetratricopeptide repeat domain 452 577 IPR011990 GO:0005515
Pvu11g1614 817 Gene3D Tetratricopeptide repeat domain 76 178 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1614 Pvu-Chr11 41086946 41089750 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1614 49 817 Glycoside Hydrolase AT3G49170 34.037 4.34e-157 478