Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1613 ATGACAACACCAGAAATTACCAATGTGAGAAGAAGAAACAATGAAGAATTAGACATAATTAATCAACTTCCAGGTGCAGTGTTGTCTCAAATCATCTCTTCACTTTCCATTGATGAAGCAGTGAGAAGTAGTGTCCTTTCCAAACAATGGAAACCCTTGTGGAAGCAAACCTCTTGCCTTGACTTTGATGGGAGACGCATGGTTAATCCTTTATCTCAACTTAATAATTCATTACCTAAAAGTATGAGTTTTGATCCTATTAAAGTTTCACAATATGCTGAGGCATATGATGAAATTGTCAACCAGGTATTGCATCTTCATCTTGGTGATTTGATTAGTTGTCGTTTTAGGCACTTTCGTCAACACCTCTGTGCTGGTGATGTGGAAAAATGGGTTGAGTTTGTGATAATGAAAAAAGGGTTAAGTTCCCTAAACCTAGAGTGTGATCAATTGATTCAAGATGTTCACCATATTTATTTGGACACGTCTCCAGATGGGGAAATTGAATTCAAACCTAGGATCTTTTCAAATCTTTATTCTCTTGAGTTGACCAACTACACATTGAATATTGAAACACCATTTGCATTTGAAAGTTGTGAGAAGTTGAGAATATTAAAATTGAAGAAAATAGTTATGGAGGATGCAACCATTAATGGAATTTTGGATAAGTGCTTGTGCTTGGAGAAGTTTAGTCTCACTAAGTCATCTGGATTCAAGAAACTCAACATTATGAACTCGAGTTTGAAATATTTGAAGCTTAAATTGTTGATGCTTAGTGAACTAAATGTTTTTGTTTTAAACCTTCAAGTTGTGATGCTCAATTCTCTAATTTGCCCACCAGAAGGTTTGAGAATTTCCACCCCAAATATAGACTCTTTTTATTATATTTATAATGCATTATTTCAGACATCGCAGTCTCATCAACTGAACCAGAGTGTTCTAAAAGCTCAAGATATTTTTGAAAATTGTAGCGATCTTTTGGGATCTCGAACAATGAACATTTTTCAAAATCTATTACTCTTGTCAATTGATTTGGATCTGAACAATATAAGAGAAGCCTTATCCCTTTCGTTCATACTAAAATCATGTGTCCACCTCAAGAATCTTGAAATTACTATACCGGATGATAAATCCAATGATGGCTCTCATGATTGTAGTTTACCATTTCCCAACTCAACATTTTGGGAAAGAAAAGGAGTATATTACAATTGCATCAATTACAAGTTGGAATATGCTACTATAAAAGGATTCAAAGGTAAGGAGCAAGAAGTGAAATTTGTTAAGCACATAATTACAAATGCCAACAGGGTGAAAAAGATTACCATAATTTGTGATTCTGTGATTGTTGATGAGGCAAAAGATCTACTCTCAATTTTAAGAACTTCACCTTATCTCTCCATCATCCTAGAATTGAAAAAGGAATTGGTTGACATTGCTGGAGTCCAAGATGTGGTGGCAGCACAAGAATAA 1470 0.3456 MTTPEITNVRRRNNEELDIINQLPGAVLSQIISSLSIDEAVRSSVLSKQWKPLWKQTSCLDFDGRRMVNPLSQLNNSLPKSMSFDPIKVSQYAEAYDEIVNQVLHLHLGDLISCRFRHFRQHLCAGDVEKWVEFVIMKKGLSSLNLECDQLIQDVHHIYLDTSPDGEIEFKPRIFSNLYSLELTNYTLNIETPFAFESCEKLRILKLKKIVMEDATINGILDKCLCLEKFSLTKSSGFKKLNIMNSSLKYLKLKLLMLSELNVFVLNLQVVMLNSLICPPEGLRISTPNIDSFYYIYNALFQTSQSHQLNQSVLKAQDIFENCSDLLGSRTMNIFQNLLLLSIDLDLNNIREALSLSFILKSCVHLKNLEITIPDDKSNDGSHDCSLPFPNSTFWERKGVYYNCINYKLEYATIKGFKGKEQEVKFVKHIITNANRVKKITIICDSVIVDEAKDLLSILRTSPYLSIILELKKELVDIAGVQDVVAAQE* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1613 489 Pfam FBD 404 442 IPR006566 -
Pvu11g1613 489 SUPERFAMILY F-box domain 17 61 IPR036047 GO:0005515
Pvu11g1613 489 PANTHER FBD, F-BOX AND LRR PROTEIN 11 466 - -
Pvu11g1613 489 PANTHER F-BOX PROTEIN-LIKE 11 466 - -
Pvu11g1613 489 SMART 9598neu4hmm 403 470 IPR006566 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1613 Pvu-Chr11 41073051 41075529 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1613 18 233 EF-hand Containing Proteins AT5G41840 25.446 3.59e-06 47.8