Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0738 ATGGATCCTTCTACTGGACAACACCAGCAAATGTCTAACCAGTCATTGGAGAACATGTTGGCATGTTCAAAAGCACAGCAGGAGAGGAAGCCAAGGCCTCAGCCAGAACAAGCTCTAAAGTGCCCCAGATGTGACTCCACCAACACCAAATTTTGTTACTACAACAATTATAGCCTTTCCCAGCCAAGGTATTTCTGCAAGTCTTGCAGGAGATATTGGACCAAAGGAGGAACACTGAGGAATGTTCCTGTGGGAGGAGGGTGCAGGAAGAACAAGAGGTCATCATCATCTTCAACATCAAAGAGAATCCAAGATCAAGGATTCACACCCAATCCAAACAACCCGCTCACTGGCCTTCCTTCATTGTCTTATGACTCCAGCGACCTCACTCTTGCATTAGCAAGGCTGCAAAAGCAGTCATGTGGGCAATTGGGTTATGATGAGCATGACTTTTCAATTTTGGGGAACCACACAAGCACCCCATGTGATATCCTTGGCAACCCTGGCATGCACCACTCTTCCACAAACCCAGGTTTCATGGATTCGCTTAGAAGTGGATTCCTTGGAACCCAAAGTAATATTCAGAATCTGTACTATGGATATGGGAATGGGGACATGGGGGAGGTGGACAATGGCAATGCTTGTGGTGGGGTTAGTGGAGAGATGATGCTGCCTTATGATCAAGAAATGAGTGTTGCCACCACCCAAGCAGTGACAGTCACTACCATGAAACAAGAACTTTGCAATGCAAGGGAACAAAGTGAGAGTAGGGTGTTGTGGGGCTTCCCATGGCAACTCAATGGAGATACCAACATGGGTGAGCTTGACTCAGGAAGAGCTAATTGGAATGGTCTCACCTCATCTTGGCATGGACTTCTCAATAGTCCACTAATGTAG 897 0.4682 MDPSTGQHQQMSNQSLENMLACSKAQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSTSKRIQDQGFTPNPNNPLTGLPSLSYDSSDLTLALARLQKQSCGQLGYDEHDFSILGNHTSTPCDILGNPGMHHSSTNPGFMDSLRSGFLGTQSNIQNLYYGYGNGDMGEVDNGNACGGVSGEMMLPYDQEMSVATTQAVTVTTMKQELCNAREQSESRVLWGFPWQLNGDTNMGELDSGRANWNGLTSSWHGLLNSPLM* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0738 298 MobiDBLite consensus disorder prediction 1 40 - -
Pvu11g0738 298 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Pvu11g0738 298 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Pvu11g0738 298 MobiDBLite consensus disorder prediction 90 121 - -
Pvu11g0738 298 MobiDBLite consensus disorder prediction 1 22 - -
Pvu11g0738 298 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 297 IPR045174 GO:0003700|GO:0006355
Pvu11g0738 298 MobiDBLite consensus disorder prediction 83 121 - -
Pvu11g0738 298 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Pvu11g0738 298 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 7 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0738 Pvu-Chr11 6441508 6443452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0738 1 298 C2C2-Dof Transcription Factor Family AT2G28510 40.367 2.46e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu11g0738 zf-Dof 6.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0738 - - gmx:100799737 473.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1422 5 36604141 36605891 Pvu11g0738 11 6441508 6443452 PCT