Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0617 ATGGCTGACAAAGATACCGTTTATTCAGCAGGAAATGAAAGGAGAATTCCAATTTTCAGTTTGTTTAAAGATGCTAGACTAGTTTTCAAATCTGACAATCTTGGTCGTGAAATATTATCAATTGCATTGCCTTCAGCAATGGCTTTGACAGCTGACCCTATTGCTTCACTGGTTGACACAGCATTTATTGGTCAAATAGGTCCAGTGGAGCTTGCAGCTGTAGGGGTGGCCATAGCACTCTTCAATCAAATATCAAGAATTGCAATATTCCCACTTGTCAGTGTCACTACCTCTTTTGTGGCTGAGGAAGATACCCTTTCTGGAGCCTGTCCTCAAGTAGAGAAGAATGAATGGTTGGAGGCAAGTCCAATTATAGATGCTGAAATGAAAGAACTAATACCACTTGAAAAAGACACAGGTGGAAATGTGCAAAAATCAGATTTGATTGGTATTGACTTTAATATAGTTAAGTTTGAACATAAGAAAAGACATATCTCTTCTGCTTCATCAGCATTACTTATCGGTGGCATTGTTGGCATCATCCAAGCAATGTTCCTCATATCTGCTGCAAAACCTTTATTGAACTTCATGGGAGTAACCTCAGACTCTCTTATGCTAAACCATGCACATAACTACCTGACATTGAGGTCTCTTGGTGCTCCTGCAGTTCTTCTCTCGTTAACTATGCAGGGAATCTTCCGAGGATTCAAAGACACTAAAACACCTTTATATGCCACATTGGTAGGAGATGTGACCAATGTAGCCCTTGATCCTTTATTCATATTTGTTTTCCGCTTCGGGGTCAGTGGTGCAGCTGTTGCTCATGTTATATCTCAGTACCTAATTTCACTTATGCTCCTGTGGAGCTTGATGGAAAAAGTTGATCTTATACCGCCAAGCATCAAGCATCTACAATTTCATCGATTTCTTAAAAATGGCTTTCTATTATTTGTAAGAGTAATTGCTGTAACATTCTGTGTGACACTGGCAGCAGCATTAGCTGCACGCAAGGGACCAACATCCATGGCTGCATTTCAAGTCTGCCTGCAGATTTGGTTAGCTGTGTCCCTTCTTGCCGATGGTCTGGCTGTTGCCGGACAGGCAATTCTTGCAGGTGCATTTGCTAACAAGGACTATGAGAAGGCCGAAGCAACTGCATCTCGAGTATTACAGCTGGGTTTGGTTCTGGGGTTAGCTCTTGCATTCATTCTTGGAACAGGACTGCATTTTGGAGCTAAACTATTTACCAAAGATGTTAATGTCATTCACCTCATTAGAATTGGGATCCCGTTTGTAGCAGCCACTCAACCCCTCAACGCTTTGGCATTTGTATTTGATGGTATCAACTTTGGGGCATCTGATTTTGCATATTCAGCCATTTCATTGGTTGTGGTGGCAATTGTCAGCATAATCTGTCTACTTGTTTTATCATCTGTTGGCGGTTTCACAGGAATTTGGATTGCTTTGAGCATCTATATGGGTCTTAGAGCAATTGTGGGCCTTCTGAGGATTGGAACTGGGTCAGGACCCTGGAAGCTGATTAGGAGCTAA 1551 0.4184 MADKDTVYSAGNERRIPIFSLFKDARLVFKSDNLGREILSIALPSAMALTADPIASLVDTAFIGQIGPVELAAVGVAIALFNQISRIAIFPLVSVTTSFVAEEDTLSGACPQVEKNEWLEASPIIDAEMKELIPLEKDTGGNVQKSDLIGIDFNIVKFEHKKRHISSASSALLIGGIVGIIQAMFLISAAKPLLNFMGVTSDSLMLNHAHNYLTLRSLGAPAVLLSLTMQGIFRGFKDTKTPLYATLVGDVTNVALDPLFIFVFRFGVSGAAVAHVISQYLISLMLLWSLMEKVDLIPPSIKHLQFHRFLKNGFLLFVRVIAVTFCVTLAAALAARKGPTSMAAFQVCLQIWLAVSLLADGLAVAGQAILAGAFANKDYEKAEATASRVLQLGLVLGLALAFILGTGLHFGAKLFTKDVNVIHLIRIGIPFVAATQPLNALAFVFDGINFGASDFAYSAISLVVVAIVSIICLLVLSSVGGFTGIWIALSIYMGLRAIVGLLRIGTGSGPWKLIRS* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0617 516 CDD MATE_DinF_like 34 506 IPR044644 -
Pvu11g0617 516 TIGRFAM matE: MATE efflux family protein 44 486 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Pvu11g0617 516 Pfam MatE 166 259 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Pvu11g0617 516 Pfam MatE 318 471 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Pvu11g0617 516 PANTHER PROTEIN DETOXIFICATION 43 124 515 - -
Pvu11g0617 516 PANTHER PROTEIN DETOXIFICATION 43 11 119 - -
Pvu11g0617 516 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 11 119 IPR044644 -
Pvu11g0617 516 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 124 515 IPR044644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0617 Pvu-Chr11 5222769 5227010 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1521 5 37505124 37509928 Pvu11g0617 11 5222769 5227010 PCT