Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0423 ATGTCTACTATGCAAGAACAAGGCTTAGAAACAGTGGTAAAGGGATCAAAGTGTGAAGAGTGTGGGAACCAAGCCAAAAAGGACTGTGCCTACTCAAGGTGCAGAACCTGCTGCAAGAACAAAGGCTTCAAGTGCCAAACTCATATCAGAAGCACTTGGATTCCTGTGGATAGAAGACGCCACAAAGTGGAGCACCAACCTCTCACCACTAATCTTCAGCAGGGAGATATTCCTAAAAGGCACAAGCACAACCCATATTCAAGCTTGGAGTTCAAATTTCCAGCTGTTACAAGTTCCATGGCGTCATTCAGCTGTGTTCAGGTGCGTTCTATGGATGACACGGTTAATGAAACCGCGTATCAAACTTCTGTGAACATTGGAGGACACGTGTTTAGTGGTTTTCTCTATGATCAAGGTCCTGAACAAAGCTTCAACGCTAAGGGTGACAACCCTTTTGATCAACAACACGATCTCAATCTTAGGAGTGTTTCACTCCACACTCGTGATGGTGCAAGTGCAACTATGCCTCCACTCTCACTCACTGCTTCTCAAGAACCATTTTTTATTCCACACCATTCATTTCCCCTAGCTTCCTTCAGACCTGATCTGACATACTTGTCACACCCAAAACCGTAA 636 0.4481 MSTMQEQGLETVVKGSKCEECGNQAKKDCAYSRCRTCCKNKGFKCQTHIRSTWIPVDRRRHKVEHQPLTTNLQQGDIPKRHKHNPYSSLEFKFPAVTSSMASFSCVQVRSMDDTVNETAYQTSVNIGGHVFSGFLYDQGPEQSFNAKGDNPFDQQHDLNLRSVSLHTRDGASATMPPLSLTASQEPFFIPHHSFPLASFRPDLTYLSHPKP* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0423 211 PANTHER BNAC01G23660D PROTEIN 2 200 - -
Pvu11g0423 211 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 17 59 IPR006510 -
Pvu11g0423 211 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 200 IPR007818 GO:0003700|GO:0006355
Pvu11g0423 211 Pfam Domain of unknown function (DUF702) 15 141 - -
Pvu11g0423 211 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 92 140 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0423 Pvu-Chr11 3574481 3575740 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pvu11g0423 DUF702 3.2e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0423 11 3574481 3575740 Pvu11g0423 11 3574481 3575740 ECH
Pvu11g0423 11 3574481 3575740 Pvu2g1715 2 30900109 30902938 ECH
Pvu9g0045 9 826504 827586 Pvu11g0423 11 3574481 3575740 ECH
Pvu9g0139 9 2162528 2164509 Pvu11g0423 11 3574481 3575740 ECH
Pvu11g0423 11 3574481 3575740 Pvu9g0045 9 826504 827586 ECH