Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0419 ATGAAGATCCAGTGTGATGTGTGTCACAAAGAAGTGGCCTCCTTGTTCTGCCCCTCAGATGAAGCAGCTCTCTGCCATGCTTGTGATAGCAGCATCCACCATGCCAACAAGCTCGCAGACAAACACAAACGCTTCTCTCTCCACCACCCCACCTCCAAAGCCACCACTCTCTGTGATATCTGTCATGAGAAGCGTGCTTATGTGTTTTGCAGAGAGGACAGAGCTCTCCTTTGTAGACAATGTGACGTTTCCGTTCATGGAGCCAACGAACATACCAAGACACACGACAGATTTCTTCTCACTGGAATAAAGCTTGGTGCCACCACCGAAGAAAGAACAATAACAACCTCTCGTAATTCTAAATTAACTGCACAAAGTTCACTCTCAAACCAAAATATTGGTTCCTCTCGCACGGTAGGAGTAACTTGTGACTCGAGTTCGGTTCCAACAAGCAGCATATCTGAGTACTTGATTCAGACCATTCCCGGTTACTGCATGGAAGACCTTTTAGATGCTTCTTTTGCATCAAATGTTTGTTCTAAGGATTATGAGCAGCAATCAGCGTTTGAAAATGAAGATGATCAACTGCAATCTCAATTTACGAGTGCTTCGAATCTTTATCCTGAGATTGATTGTTTAGTTGGAGTTATGGAAATGCCAAAAGCAAAAGGTGGTGAAGAATACTCCAATTGGATTCATAGTTATGAGTACCCACCCTACAAAGTTCCCTCAATTACTCCTCCTTTGGTAAAAAGAACTAAACGCTCTCGTTAA 774 0.4328 MKIQCDVCHKEVASLFCPSDEAALCHACDSSIHHANKLADKHKRFSLHHPTSKATTLCDICHEKRAYVFCREDRALLCRQCDVSVHGANEHTKTHDRFLLTGIKLGATTEERTITTSRNSKLTAQSSLSNQNIGSSRTVGVTCDSSSVPTSSISEYLIQTIPGYCMEDLLDASFASNVCSKDYEQQSAFENEDDQLQSQFTSASNLYPEIDCLVGVMEMPKAKGGEEYSNWIHSYEYPPYKVPSITPPLVKRTKRSR* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0419 257 SMART bboxneu5 53 100 IPR000315 GO:0008270
Pvu11g0419 257 SMART bboxneu5 4 47 IPR000315 GO:0008270
Pvu11g0419 257 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Pvu11g0419 257 Pfam B-box zinc finger 56 92 IPR000315 GO:0008270
Pvu11g0419 257 Gene3D Classic Zinc Finger 1 97 - -
Pvu11g0419 257 CDD Bbox1_BBX-like 57 100 - -
Pvu11g0419 257 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Pvu11g0419 257 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pvu11g0419 257 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 200 - -
Pvu11g0419 257 CDD Bbox1_BBX-like 5 47 - -
Pvu11g0419 257 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0419 Pvu-Chr11 3531452 3533541 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Pvu11g0419 zf-B_box 6.1e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0419 11 3531452 3533541 Pvu11g0419 11 3531452 3533541 ECH
Pvu11g0419 11 3531452 3533541 Pvu11g0400 11 3376440 3378947 ECH
Pvu11g0419 11 3531452 3533541 Pvu3g2678 3 48801087 48803925 ECH
Pvu11g0419 11 3531452 3533541 Pvu2g1150 2 22653997 22656628 ECH