Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0400 ATGCGAACCCTTTGCGACGTTTGCGAGAGCGCCGCTGCCATTCTCTTCTGCGCCGCCGATGAGGCTGCTCTCTGCTTTGCTTGTGACCAAAAGATCCATATGTGTAACAAACTTGCTAGTAGACACATTCGGGTTGGCCTTGCTGACCCCACTGATGTTCCACGCTGTGACATATGTGAAAATGCGCCTGGTACTGAGGCTTTCTTTTACTGTGAGATAGATGGTAGTTCGCTGTGTCTGCAATGTGATATGATTGTGCATGTTGGTGGTAAAAGAACTCACGAAAGATATCTTCTATTGAGGCAAAGAGCTGAGTTTCCAGGAGATAAACCTGCCCAAATGGAAGAACTAGGGCTGCAACCTCTGGATCAAAATGAATTTAGGAGGGATGAAGGTCAGTCCCTCAAGCTAAAAACAAGAGACAGTCAGCAGAATCACAGTATCTTACCTGTTCCAAGACAAGAAAATAATATTGATGGCCATAGAAAAATGGATAAAAAGTTAATTGATCTCAACACCAGGCCATTGCGGCTAAATGGACCAACACCAAACAACCAGGGTATGGATATTTTAAGAGGCAATAATCATGAATTTGCAAGTGTGCCACCAGTTGAATCCTACAAACAAGGGGCTGAGAAACAATAA 645 0.4403 MRTLCDVCESAAAILFCAADEAALCFACDQKIHMCNKLASRHIRVGLADPTDVPRCDICENAPGTEAFFYCEIDGSSLCLQCDMIVHVGGKRTHERYLLLRQRAEFPGDKPAQMEELGLQPLDQNEFRRDEGQSLKLKTRDSQQNHSILPVPRQENNIDGHRKMDKKLIDLNTRPLRLNGPTPNNQGMDILRGNNHEFASVPPVESYKQGAEKQ* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0400 214 CDD Bbox1_BBX-like 4 47 - -
Pvu11g0400 214 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 212 - -
Pvu11g0400 214 MobiDBLite consensus disorder prediction 177 191 - -
Pvu11g0400 214 MobiDBLite consensus disorder prediction 156 172 - -
Pvu11g0400 214 MobiDBLite consensus disorder prediction 137 192 - -
Pvu11g0400 214 SMART bboxneu5 1 47 IPR000315 GO:0008270
Pvu11g0400 214 SMART bboxneu5 51 99 IPR000315 GO:0008270
Pvu11g0400 214 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 212 - -
Pvu11g0400 214 MobiDBLite consensus disorder prediction 138 152 - -
Pvu11g0400 214 Gene3D Classic Zinc Finger 2 99 - -
Pvu11g0400 214 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pvu11g0400 214 ProSiteProfiles Zinc finger B-box type profile. 54 99 IPR000315 GO:0008270
Pvu11g0400 214 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0400 Pvu-Chr11 3376440 3378947 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pvu11g0400 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0400 11 3376440 3378947 Pvu11g0400 11 3376440 3378947 ECH
Pvu9g0145 9 2246018 2247600 Pvu11g0400 11 3376440 3378947 ECH
Pvu11g0419 11 3531452 3533541 Pvu11g0400 11 3376440 3378947 ECH