Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0156 ATGTTTCCACAAACACCAACTTTCTCACTTTTCATTGTCCTCTCTTCAATAGTCTTATGTAATGGCTATTACATAGAGGAGCCACTTTATAAGACAAATTATAAACACTACCCTATGCATGATGGCAGATTCATGAAGAGAAGACATGAACACTTTGGTCTTATAACAAGGGCTAATAGAGTTGCCCCTCTTTCTTCTAGGCAGAGTGGAACAGTTAATGTTGATGACTTCGGAGCCAAAGCAGATGGAAGAGATAATACCAAGGCCTTTGGAAAGGCATGGAGTGAAGCATGTTCAAGAGGGGGTGTCCTTGTGGTACCTGAAAATAGGATCTATCGTCTTAAGCCAATCACATTTTCTGGTCCATGTAGACCCAACACTGCCTTTATGCTTTATGGCACAATCGAGGCATGGACTCAAATGTCAGCATACCAAGAAGATAGACAACACTGGATTATCTTTGATAGTGTTTCAAATTTCAGAGTTGGTGGTGGTGGCACATTCAATGGCAAAGGAAAAAAGTGGTGGCAAAACTCTTGCAAAGTCACCACTAACCTTCCATGCAACGATGGACCAAGACCAAAGGCTGTGACTTTCTTTCAATGCAAAAATTTGGAAGTGAGAAACCTGATGTTCAAAGATGCACAGCAAATGCACGTAACCTTTGAAGGATGCTTCAATGTTATTGCTTCGAATTTGGTCATCAGAGCACCAGGGGACAGCCCCAACACTGATGGAATTCATGTCGCAGACACACAAAATATTGTCATAAGCAATAGTGATATTGGGACAGGTGATGATTGTATTTCGATAATAAGTGGGTCACAAAACGTTCGAGCAACAGATATCACCTGCGGGCCGGGACATGGAATAAGCATTGGTAGCTTGGGAGCAGATAACTCAGAAGCTGAAGTGTCCAATGTGGTAGTGAACAGAGCAACTTTAAAAGGAACCACTAATGGAGTGAGAATAAAGACTTGGCAGGGAGGCTCTGGTTATGCAAGAAACATCAAATTTTTGAACATAATGATGCAAAATGTGACAAATCCCATAATCATAGATCAATACTACTGTGACCAAGCTAAGGCATGTCAAGAGCAGAACTCAGCTGTGCAATTAAGCAATGTTTTATACCAAAACATAAGAGGAACGAGTGCCTCAGAAGTGGCTATTAAATTTGACTGCAGCAGAGCAGTCCCATGCAGACAAATCTACCTGCAGGATGTGATTTTAGAGCCACAAGGCAGAGGTGGCACCATTGCTACATGTGAAAATGTTAGATATGTCAACAGAGGAAAGTTTTTTCCTCAATGCACTCCATGA 1323 0.4157 MFPQTPTFSLFIVLSSIVLCNGYYIEEPLYKTNYKHYPMHDGRFMKRRHEHFGLITRANRVAPLSSRQSGTVNVDDFGAKADGRDNTKAFGKAWSEACSRGGVLVVPENRIYRLKPITFSGPCRPNTAFMLYGTIEAWTQMSAYQEDRQHWIIFDSVSNFRVGGGGTFNGKGKKWWQNSCKVTTNLPCNDGPRPKAVTFFQCKNLEVRNLMFKDAQQMHVTFEGCFNVIASNLVIRAPGDSPNTDGIHVADTQNIVISNSDIGTGDDCISIISGSQNVRATDITCGPGHGISIGSLGADNSEAEVSNVVVNRATLKGTTNGVRIKTWQGGSGYARNIKFLNIMMQNVTNPIIIDQYYCDQAKACQEQNSAVQLSNVLYQNIRGTSASEVAIKFDCSRAVPCRQIYLQDVILEPQGRGGTIATCENVRYVNRGKFFPQCTP* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0156 440 SMART pbh1 225 251 IPR006626 -
Pvu11g0156 440 SMART pbh1 252 273 IPR006626 -
Pvu11g0156 440 SMART pbh1 334 355 IPR006626 -
Pvu11g0156 440 SMART pbh1 305 326 IPR006626 -
Pvu11g0156 440 Gene3D - 57 435 IPR012334 -
Pvu11g0156 440 ProSitePatterns Polygalacturonase active site. 282 295 IPR000743 GO:0004650|GO:0005975
Pvu11g0156 440 Pfam Glycosyl hydrolases family 28 104 427 IPR000743 GO:0004650|GO:0005975
Pvu11g0156 440 PANTHER - 6 439 - -
Pvu11g0156 440 PANTHER POLYGALACTURONASE 6 439 - -
Pvu11g0156 440 SUPERFAMILY Pectin lyase-like 66 439 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0156 Pvu-Chr11 1202722 1205861 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0156 11 1202722 1205861 Pvu11g0156 11 1202722 1205861 ECH
Pvu11g0156 11 1202722 1205861 Pvu5g0235 5 2000935 2005462 PCT