Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1470 ATGCAAGACCCGACAGCATTCGCAGGTTTGAAGCACCCTCAGTTTCCCGAACAAGAACAACTCAAATGCCCGCGTTGTGACTCCTCAAACACCAAATTCTGCTACTACAACAACTACAACCTCTCTCAGCCACGCCACTTTTGCAAGAACTGCAGAAGGTACTGGACAAAGGGTGGTGCTTTGAGAAACATCCCTGTTGGGGGTGGAAGTAGAAAGACCACAAAACGTTCATCCACCTCAAAACGCTCTTCTGCACCGCCTTCCTCTGCTGTTTCTGAGGCTGACCCGACCCGGATTTGCACCAACCCGGTTGAGCAAGACCCTAGGGTGGTCAACATTGGTGGCACCTTCAGTTCTCTGTTGGCCTCATCTGGGCACTTTGGAACCCTCTTGGAGGGTCTGAATCCAACTGGGTCAGATCTCAAAATGGGTGAATTTGGGGAGGGTGTGAGTTCTGACCTGGGTTTGAATTCAAACCCGGGTTTGCAGCTTCAGAGCAATGGGAGTTCAGAGGGTTTTCTGGGTATGCAGAATGGGGAATCAACCTGTTGGAATGGTGCTCATGGTTGGTCTGATCTTGCAATATACACACCTCGCCCAAGTTTTCAATAG 612 0.5033 MQDPTAFAGLKHPQFPEQEQLKCPRCDSSNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKTTKRSSTSKRSSAPPSSAVSEADPTRICTNPVEQDPRVVNIGGTFSSLLASSGHFGTLLEGLNPTGSDLKMGEFGEGVSSDLGLNSNPGLQLQSNGSSEGFLGMQNGESTCWNGAHGWSDLAIYTPRPSFQ* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1470 203 MobiDBLite consensus disorder prediction 70 96 - -
Pvu10g1470 203 PANTHER DOF ZINC FINGER PROTEIN DOF3.1-LIKE 3 203 - -
Pvu10g1470 203 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 3 203 IPR045174 GO:0003700|GO:0006355
Pvu10g1470 203 MobiDBLite consensus disorder prediction 63 99 - -
Pvu10g1470 203 ProSiteProfiles Zinc finger Dof-type profile. 21 75 IPR003851 GO:0003677|GO:0006355
Pvu10g1470 203 ProSitePatterns Zinc finger Dof-type signature. 23 59 IPR003851 GO:0003677|GO:0006355
Pvu10g1470 203 Pfam Dof domain, zinc finger 19 75 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1470 Pvu-Chr10 41333505 41336027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1470 1 131 C2C2-Dof Transcription Factor Family AT1G51700 51.235 2.58e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu10g1470 zf-Dof 3.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1470 - - gmx:100790822 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1470 10 41333505 41336027 Pvu10g1470 10 41333505 41336027 ECH
Pvu5g1660 5 38639927 38641622 Pvu10g1470 10 41333505 41336027 PCT