Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1205 ATGGAGGGAATGACTCCCAATTCATGTTCAAGGCTAGTTTTAGAGAAGAAAGCAAGACCACAAGAGCAACTGAATTGTCCAAGGTGCAATTCAACTAACACAAAGTTCTGTTATTACAACAACTACAGCCTCACACAACCAAGATACTTCTGTAAGACTTGTAGAAGGTATTGGACAGAAGGAGGGTCTCTGAGAAACGTTCCGGTTGGAGGTGGTTCAAGAAAGAACAAGAAGGTCTCTTCAGGAGCAGGAGCCACAGCTTCATCATCATCATCACCAAAGGTTCCTGACCTAAATCCCCCAAACCTCTCAGTCTCAGTCTCGGCTCTCTCTTCTCAAAACCCTAAAATAATACATGGTGGCCAAGATCTCAACCTGGCTTTCCCAGCTATGGACAAGTATCATCATGGCATCTCCCCTTATGTTGAGATGCAAAACAGTGACACCACCACTCATCACCAAAACTCCACTTCTTGTTCTGCTCCTCCAACTACTCTTTCAGCTCTTGAGCTGCTAAGGTCCAGCATGGCATCTAGGGGTTTGAACCCTTATGCTCCTTCTTCCTTGATGCCAAACTCAGCAAATAACAATGCTCTCTACCCATCAGGGTTTCCCATGCAAGAGGTTAAACCAAGCCTTAGCTTTTCCTCGGTTGATGGGATGGGAAATAGATCATATGATCACCATGTCCAAGAGAGGGGTGGCAGAGTTTTGTTCCCTTTTGGAGATGTCAATAAGCAGCTTTCTGCTGCAGGATCAGCTGAAGTGGAACACAATAAAGAACAACAACAACAACAAGGGAACTCAACTGGATATTGGAGTGGAATGATTGGTGAAGGGACATGGTAA 849 0.4488 MEGMTPNSCSRLVLEKKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKVSSGAGATASSSSSPKVPDLNPPNLSVSVSALSSQNPKIIHGGQDLNLAFPAMDKYHHGISPYVEMQNSDTTTHHQNSTSCSAPPTTLSALELLRSSMASRGLNPYAPSSLMPNSANNNALYPSGFPMQEVKPSLSFSSVDGMGNRSYDHHVQERGGRVLFPFGDVNKQLSAAGSAEVEHNKEQQQQQGNSTGYWSGMIGEGTW* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1205 282 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 12 277 IPR045174 GO:0003700|GO:0006355
Pvu10g1205 282 MobiDBLite consensus disorder prediction 251 282 - -
Pvu10g1205 282 MobiDBLite consensus disorder prediction 256 276 - -
Pvu10g1205 282 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
Pvu10g1205 282 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
Pvu10g1205 282 MobiDBLite consensus disorder prediction 79 100 - -
Pvu10g1205 282 MobiDBLite consensus disorder prediction 67 100 - -
Pvu10g1205 282 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Pvu10g1205 282 PANTHER DOF ZINC FINGER PROTEIN DOF3.7 12 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1205 Pvu-Chr10 38220876 38223161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1205 16 282 C2C2-Dof Transcription Factor Family AT3G61850 49.135 6.63e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu10g1205 zf-Dof 3.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1205 - - gmx:778110 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1205 10 38220876 38223161 Pvu10g1205 10 38220876 38223161 ECH
Pvu6g1204 6 23050676 23052519 Pvu10g1205 10 38220876 38223161 PCT