Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00919 ATGGACACTCAGTGGGCACAGGGTATTGGAGTGGTTAAACCTATGGAAGGTTCAAAGCCTCCTCCTATTATGGAGAAAAGGGCAAGGCCACAGAAAGATCAAGCTTTGAACTGCCCAAGGTGCAATTCAACAAACACCAAATTCTGCTATTACAATAACTACAACCTCGCCCAACCAAGGTACTTTTGCAAGACTTGTAGAAGGTATTGGACTGAGGGAGGCTCTTTGAGAAATGTTCCAGTGGGTGGAGGCTCAAGAAAGAACAAGAGACCAACACCTTCATCATCATCAACTAAGAAGATTATTCCTGATCTGACAACTACCCCACCAAATTTCCCTCAGTCTTCTTCTTCTCAAAACCCAAAGATCCATCAAGGCCAAGATCTTAACTTAGCATATCCTCCAGTTGAGGACTACAACAGCAACAGCATATCTAAATTCATTGAGGTTCCATACAACACTGAAGACAACAACAAGACTGAAACCCCTCATCATCACCTCAACCTTCAAAATCTCACTTCTTCTTCTTCTTCTTCTCACTTTTCTGCAGTGGAGCTTCTCAAAACTGGTATTACTACTTCATCAAGGGGTTTGAACTCTTTCATGCCCACCATGTCGGTTTCAGATCATTCCAGCACAATAATGTATAACTCAACTGGGTTTCCTTTGCAAGACTTTAAGCCTGGCCTTAACTTCAGTTTAGAGGGGTTTCAAAATGGTTATGGTGGTGGTCTCCAAGAGGGTGAAGGGGCAAGGATCTTGTTTCCTGTTGAGGATTTGAAGTCACATCAGGTCACAAAGAGTGCTGAGTTTGGGCCAAATAGAACTCAAGGGGATTCAACTGGGTATTGGAATGGCATGCTAGGTGGAGGATCATGGTAG 882 0.4342 MDTQWAQGIGVVKPMEGSKPPPIMEKRARPQKDQALNCPRCNSTNTKFCYYNNYNLAQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRPTPSSSSTKKIIPDLTTTPPNFPQSSSSQNPKIHQGQDLNLAYPPVEDYNSNSISKFIEVPYNTEDNNKTETPHHHLNLQNLTSSSSSSHFSAVELLKTGITTSSRGLNSFMPTMSVSDHSSTIMYNSTGFPLQDFKPGLNFSLEGFQNGYGGGLQEGEGARILFPVEDLKSHQVTKSAEFGPNRTQGDSTGYWNGMLGGGSW 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00919 293 ProSiteProfiles Zinc finger Dof-type profile. 36 90 IPR003851 GO:0003677|GO:0006355
Pumo9g00919 293 MobiDBLite consensus disorder prediction 1 31 - -
Pumo9g00919 293 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 25 182 IPR045174 GO:0003700|GO:0006355
Pumo9g00919 293 MobiDBLite consensus disorder prediction 75 126 - -
Pumo9g00919 293 MobiDBLite consensus disorder prediction 88 126 - -
Pumo9g00919 293 MobiDBLite consensus disorder prediction 270 293 - -
Pumo9g00919 293 ProSitePatterns Zinc finger Dof-type signature. 38 74 IPR003851 GO:0003677|GO:0006355
Pumo9g00919 293 Pfam Dof domain, zinc finger 33 90 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00919 Pumo-Chr9 20900038 20901905 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00919 26 293 C2C2-Dof Transcription Factor Family AT3G61850 43.056 8.22e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo9g00919 zf-Dof 2.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00919 - - lja:Lj0g3v0363619.1 349.362