Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00342 ATGTTGTGTGCTTGTTCCGGGGAGCAATTCAAATTTGAAGAGGCACCGCCACGGTCACCTGAGTCCTTGGCAACAAGGGATTTCTCTGCTAGTGGCCTTTCTTCAAGGACTGGGGATTGGGAATCCAAATTTGATGAAACACAAGTGGAAGATGTTGAATCTACTCTAAAAGAAGCTCTCTCATTAAACTATGAGGAAGCTCGGGCTTTGCTGGGGAGGCTTGAATATCAAAGAGGGAACTTTGATGCTGCCCTTCAAGTTTTTGAGGGTATAGACATTAGGGCTTTGGCCCCAAGGATGATAACAGCTATAGCTGAAAGAACAAAGCAAAGAAAACCACGGTCCAAGGCAGATAATGTGCTTTTTAATGTGATGTCAATGCATTCAGTAAGCCTGCTTCTTGAGGCAATTTTGCTTAAATCCAAATCCTTAGAAGAACTTGGGCGATACACTGAGGCTGCAAAGGAGTGCAGAATTGTTGTAGATACAGTTGAAACTGCTCTTCCTAATGGAATGCCTGAGGGTATTGGTGAAGATTGTAAGTTGCAAGAAATGTTCCACAAAGCATTGGAGTTGCTTCCAAATCTATGGATCAAGGCAGGTTTGCTAGATGAAGCTGTCACTGCTTATCGACGGGCTCTAGTCAAGCCCTGGAATTTGGAGCCGTGGAGGTTGGCCTGTGTACAAAAAGATTTAGCTACCACACTACTCTATGGAGGTGTTGAAGTAAACCTACCCCCTCAGTTGCAAGTGAATGGTCTAACAACACCTATGAGTGGCACTGAAGAGGCTATACTTTTGCTATTGATACTCTCAGGAAAGATGGCACTTCAGGAAATAGATTGGGACCCTGAAATAATGGATCATCTTACATTTTCACTTTCAATTACTGGGATGTTTGAATCATTGGCAGATCATGTAGAGAAGATCCTTCCAGGTGTTTATGATCGAGCTGAGAGGTGGTACTTTCTTGCTCTTTGTTACAGTGCAGCAGGACAGCATGAAGTAGCCTTGAACCTTTTGAGGAAGGCATGTGGTAGTTCTGAAGCAAAGCATAGACCCCATTTTCCTTCATTTTTGTTTGGTTCAAAGCTGTGTTCTCTACATCCAAACCATGCTCATGAAGGCATTAAATTTTCACAGGAAGTTATTGATCTAGCCAAGCATCAAAATGCGCATTTTTTGGGTCAGGGCCATAAATTTCTTGGCATTTGCCATGGAGCTGCTGCTAGAATATCTGTACTGGATTCTGAAAGAATTATATTTCAAAGAGAGTCTTTGAACTTTCTAAATGATGCTGCCCTAAATGGAAATAATGATCCAGAAGTGATGTTCAGCCTTGGACTGGAAAATGCAATTCAAAGAAATCTAAGTGCAGCTTATGACAATATAATGATGTCCTCAGACATGATGGCCGGCAGCTCCAAAAGAGGTTGGCAGCTCTTAGCACTCATAGTATCAGCACAGCAGCGGTTTAAGGATGCCGAAACTATAGTTGATTTTGCTTTAGATGAGACTGGTAGTATTGACCAGTTAGAACTACTGAGACTGAAAGCTATAATTCAAATTACTCAGCAGCAACCCAAGCAAGCAATAGAGACCTACAGAATCTTGCTAGCAGTAATTGAAGCACAAAAAGAGCATTGGCTTCAAGCCAATACATTCAGGCATGAGGCATTAACAGAACAGAAGTTGGAAAAGGAAGCCTGGCAGGATTTGGCTACCATTTATGCAGATCTTAGTTCCTTTCTTGATGCAAAAGCTTGTGTTGACAAGGCACAGTTGATAGAATTTTTTTCTCCCAGAAGTTGGCATATTACTGGGTTGCTGTTTGAGGCTCAATCATTGCATAAGGAGGCCTTTGTTTCCTTCTCAGTCTCATCATCAATAGAACCGGATTACATTCCCAGTATAATTTCAACTGCAAAATTGTTGCTTAAACTTGGCATGCAATCACTCCCAATTGCAAGAAGCTTTTTAATGAATGCTTTGAGATTAGACCCCACAAACCATGATGCATGGTATAACCTTGGATTGGTTTCAAAAATGGAAGGTTCATTACAACAAGCAGCAGATTGCTTTCAAGCTGCATATGAGCTGAAGCTTTCAGCTCCAGTGCAAAAATTTGAGTGA 2133 0.4168 MLCACSGEQFKFEEAPPRSPESLATRDFSASGLSSRTGDWESKFDETQVEDVESTLKEALSLNYEEARALLGRLEYQRGNFDAALQVFEGIDIRALAPRMITAIAERTKQRKPRSKADNVLFNVMSMHSVSLLLEAILLKSKSLEELGRYTEAAKECRIVVDTVETALPNGMPEGIGEDCKLQEMFHKALELLPNLWIKAGLLDEAVTAYRRALVKPWNLEPWRLACVQKDLATTLLYGGVEVNLPPQLQVNGLTTPMSGTEEAILLLLILSGKMALQEIDWDPEIMDHLTFSLSITGMFESLADHVEKILPGVYDRAERWYFLALCYSAAGQHEVALNLLRKACGSSEAKHRPHFPSFLFGSKLCSLHPNHAHEGIKFSQEVIDLAKHQNAHFLGQGHKFLGICHGAAARISVLDSERIIFQRESLNFLNDAALNGNNDPEVMFSLGLENAIQRNLSAAYDNIMMSSDMMAGSSKRGWQLLALIVSAQQRFKDAETIVDFALDETGSIDQLELLRLKAIIQITQQQPKQAIETYRILLAVIEAQKEHWLQANTFRHEALTEQKLEKEAWQDLATIYADLSSFLDAKACVDKAQLIEFFSPRSWHITGLLFEAQSLHKEAFVSFSVSSSIEPDYIPSIISTAKLLLKLGMQSLPIARSFLMNALRLDPTNHDAWYNLGLVSKMEGSLQQAADCFQAAYELKLSAPVQKFE 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00342 710 Gene3D Tetratricopeptide repeat domain 31 240 IPR011990 GO:0005515
Pumo9g00342 710 ProSiteProfiles TPR repeat profile. 671 704 IPR019734 GO:0005515
Pumo9g00342 710 SUPERFAMILY TPR-like 559 701 IPR011990 GO:0005515
Pumo9g00342 710 MobiDBLite consensus disorder prediction 13 39 - -
Pumo9g00342 710 Coils Coil 57 77 - -
Pumo9g00342 710 Pfam Tetratricopeptide repeat 318 348 IPR019734 GO:0005515
Pumo9g00342 710 SUPERFAMILY TPR-like 66 345 IPR011990 GO:0005515
Pumo9g00342 710 Gene3D Tetratricopeptide repeat domain 544 704 IPR011990 GO:0005515
Pumo9g00342 710 SMART tpr_5 671 704 IPR019734 GO:0005515
Pumo9g00342 710 SMART tpr_5 512 545 IPR019734 GO:0005515
Pumo9g00342 710 SMART tpr_5 187 220 IPR019734 GO:0005515
Pumo9g00342 710 SMART tpr_5 318 351 IPR019734 GO:0005515
Pumo9g00342 710 SMART tpr_5 601 634 IPR019734 GO:0005515
Pumo9g00342 710 SUPERFAMILY TPR-like 425 594 IPR011990 GO:0005515
Pumo9g00342 710 Gene3D Tetratricopeptide repeat domain 270 543 IPR011990 GO:0005515
Pumo9g00342 710 MobiDBLite consensus disorder prediction 24 38 - -
Pumo9g00342 710 PANTHER PROTEIN NPG1 1 710 IPR043376 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00342 Pumo-Chr9 5439493 5443244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00342 1 709 Calmodulin-binding Proteins AT1G27460 58.345 0.0 840
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00342 9 5439493 5443244 Pumo9g00342 9 5439493 5443244 ECH
Pumo9g00342 9 5439493 5443244 Pumo10g00322 10 4342094 4346321 PCT