Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00336 ATGGGAACGGAAGGTTACACTTACATGGGACGCAGTTTGAGCGAGCTCAGCATCAACGACAATTCCTCTTCCTCCGCCTTCAGCGACTGCAACAGTGACAGATCTGGCGAATTCGCCACCGCTTCTTCGCAAACGCGGCGCTTTCTCATCGCCTGCGCCACCGAAAATTCCGACGACTTGATCCGCCAACTCGTCGCCGATCTCCACTCCTCCTCCGTCGACGATCAGAAACAAGCCGCCATGGAAATCCGATTACTTGCCAAGAACAGGCCGGAGAATCGCATCAAAATCGCAAAAGCCGGCGCAATCAAACCGCTGATTTCTCTCATTTCGTCGCCGGACCTTCAGCTTCAGGAATACGGCGTCACCGCGATTTTGAATCTCTCGCTCTGCGACGAGAACAAGGAGGTGATAGCCTCCTCCGGCGCGATCAAGCCGCTGGTGCGGGCGCTGAACACGGGAACCGCGACGGCGAAGGAGAACGCGGCGTGCGCGCTGCTTCGGCTGTCGCAGGTGGAGGAGAACAAGGCGGCGATCGGGCGGTCCGGCGCGATTCCGCTGCTGGTGAACCTCTTGGAGAGCGGCGGGTTCCGCGGGAAGAAGGACGCGTCGACGGCGCTGTACTCGCTGTGCACGGTGAAGGAGAACAAAATCAGGGCGGTGAAGGCGGGGATCATGAAGGTGCTGGTGGAGCTGATGGCGGACTTCGAGTCGAACATGGTGGACAAGTCGGCGTACGTGGTGAGCGTGCTGGTGGCGGTGCCGGAGGCGAGGGCGGCGCTGGTGGAGGAAGGAGGCGTGCCGGTGCTGGTGGAGATCGTGGAGGTTGGGACGCAGAGGCAGAAGGAAATCGCGGTGGTTATTCTGTTACAGGTGTGCGAGGACAGCGTGGCGTATAGCACCATGGTGGCTCGCGAAGGTGCGATTCCTCCTTTGGTCGCTTTGTCTCAGTCCGGCACCAATCGCGCCAAGCAAAAGGCGGAGAAATTAATTGAGCTTCTGCGGCAACCAAGATCCGGCAACGGCGCTTGTCGTACATCAGAAGTGGTGGCGTAA 1056 0.5956 MGTEGYTYMGRSLSELSINDNSSSSAFSDCNSDRSGEFATASSQTRRFLIACATENSDDLIRQLVADLHSSSVDDQKQAAMEIRLLAKNRPENRIKIAKAGAIKPLISLISSPDLQLQEYGVTAILNLSLCDENKEVIASSGAIKPLVRALNTGTATAKENAACALLRLSQVEENKAAIGRSGAIPLLVNLLESGGFRGKKDASTALYSLCTVKENKIRAVKAGIMKVLVELMADFESNMVDKSAYVVSVLVAVPEARAALVEEGGVPVLVEIVEVGTQRQKEIAVVILLQVCEDSVAYSTMVAREGAIPPLVALSQSGTNRAKQKAEKLIELLRQPRSGNGACRTSEVVA 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00336 351 SMART arm_5 254 294 IPR000225 GO:0005515
Pumo9g00336 351 SMART arm_5 172 212 IPR000225 GO:0005515
Pumo9g00336 351 SMART arm_5 90 130 IPR000225 GO:0005515
Pumo9g00336 351 SMART arm_5 131 171 IPR000225 GO:0005515
Pumo9g00336 351 SMART arm_5 213 253 IPR000225 GO:0005515
Pumo9g00336 351 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 142 184 IPR000225 GO:0005515
Pumo9g00336 351 SUPERFAMILY ARM repeat 58 331 IPR016024 -
Pumo9g00336 351 Pfam Armadillo/beta-catenin-like repeat 174 211 IPR000225 GO:0005515
Pumo9g00336 351 Pfam Armadillo/beta-catenin-like repeat 91 129 IPR000225 GO:0005515
Pumo9g00336 351 Pfam Armadillo/beta-catenin-like repeat 132 170 IPR000225 GO:0005515
Pumo9g00336 351 FunFam U-box domain-containing protein 4 45 350 - -
Pumo9g00336 351 Gene3D - 200 337 IPR011989 -
Pumo9g00336 351 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 101 143 IPR000225 GO:0005515
Pumo9g00336 351 Gene3D - 36 197 IPR011989 -
Pumo9g00336 351 PANTHER U BOX DOMAIN-CONTAINING 60 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00336 Pumo-Chr9 5333088 5335625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00336 11 341 U-box Gene Family AT2G23140 47.164 3.25e-88 276