Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00332 ATGGAACCTGTAGGAGCCTTCCCTGATGGAGAATGGGATTGCTTTCGCAGAATGTTTGCCAGTGAGGAGCATGAGCATGAGCATGATTTATTCACACCCCAATTTCCACTTCTGCTTGATGGTGATGATGAATTGAACATTGTGACACAACCCACATTTTGTGCTGCTCCTGAAGCTGGTGAAAATGAGCGTATGTTTTATTCTTTAGATGCTCACAACTCAAATTCTTCGCAGTATATTTCACAAGAAAGTAGCTATAGTAATAGCAGCAATTGTAGTGGTGATGACACTATCTTCATTACCAATCCGGGTAACACAAACTATTATTTTAGTTACCCTGATCATGTGCTAGCAAATAATGCATGTGCATATTCCATGGATGAGAAACATTTTGCCTCTTTTGTCCCATCGCTTGCTGACATTGTAACGGAAGAGAGTGCTAAGTTGTATGAAGATGTGGCAAGTGACAGATTGGAGAATTCTGAACACAATCAAATGGAACCTATTGTTTTTCCCACCAAGCAGTTGCAGCTCAAAAGAAAGCTTGATGTGCCTGCTGAAGATAAAATCAACAACAGATCCGAGAATCACAAGAAAAAGCCTCGTGTTTTAAAAGATGGGCAAGGATGCATGAAAAACGCATGGTCCAAGAAGAATCAGAAACATGTCAGCAATGGGGAAGAGGCAGAAGAGACTAATGCAGGGTCAGATGGACAAAGCTCTAGTGGTAACATGTCAGAGGATGATAACAAGGAAAATAGTGGAGGAACTACTTCAGGCTCTAAATCTGCTCTCAACTCAAATGGGAAAACAAGAGCGAGTAGGGGATCAGCAACAGATCCTCAGAGTCTGTATGCAAGGAAAAGAAGAGAGAGAATAAATGAGCGACTAAGAATCCTACAGAATCTTGTCCCAAATGGAACCAAGGTTGATATAAGCACAATGCTTGAAGAGGCAGTCAATTACGTGAAATTTTTGCAGCTCCAGATCAAGCTTTTAAGCTCCGATGATCTATGGATGTATGCTCCTCTTGCTTACAATGGACTTGACATTGGACTCAATCTCAACCTGATGAACTCCCTACCATTCTGA 1092 0.4139 MEPVGAFPDGEWDCFRRMFASEEHEHEHDLFTPQFPLLLDGDDELNIVTQPTFCAAPEAGENERMFYSLDAHNSNSSQYISQESSYSNSSNCSGDDTIFITNPGNTNYYFSYPDHVLANNACAYSMDEKHFASFVPSLADIVTEESAKLYEDVASDRLENSEHNQMEPIVFPTKQLQLKRKLDVPAEDKINNRSENHKKKPRVLKDGQGCMKNAWSKKNQKHVSNGEEAEETNAGSDGQSSSGNMSEDDNKENSGGTTSGSKSALNSNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQLQIKLLSSDDLWMYAPLAYNGLDIGLNLNLMNSLPF 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00332 363 MobiDBLite consensus disorder prediction 186 206 - -
Pumo9g00332 363 FunFam Basic helix-loop-helix transcription factor 278 335 - -
Pumo9g00332 363 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 92 349 - -
Pumo9g00332 363 SMART finulus 283 332 IPR011598 GO:0046983
Pumo9g00332 363 Pfam Helix-loop-helix DNA-binding domain 287 327 IPR011598 GO:0046983
Pumo9g00332 363 CDD bHLH_AtIND_like 278 340 - -
Pumo9g00332 363 Gene3D - 279 335 IPR036638 GO:0046983
Pumo9g00332 363 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 277 341 IPR036638 GO:0046983
Pumo9g00332 363 MobiDBLite consensus disorder prediction 229 281 - -
Pumo9g00332 363 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 277 326 IPR011598 GO:0046983
Pumo9g00332 363 MobiDBLite consensus disorder prediction 186 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00332 Pumo-Chr9 5229339 5231223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00332 252 353 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 83.178 3.70e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo9g00332 HLH 1.2e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00332 9 5229339 5231223 Pumo9g00332 9 5229339 5231223 ECH