Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00331 ATGGCTCTGGAAGCTCTCAACTCACCTACAACAGCCGCTCCATCTTTCCCTTTTGACGACCCAACTGTTCCATGGGCGAAACGCAAGCGTTCCAAGCGTTCCCGCGACCACCCTTCGGAGGAAGAGTACCTCGCTCTCTGCCTCATCATGCTCGCTCGCGGCGGCACCACCCGCCACGTTAGCAGTCCTCCGCCACCGCCACAACCGACTCCAGATCCTTCCACCAAGCTCAGTTACAAATGCTCCGTTTGCGACAAGACCTTCCCCTCTTACCAAGCGCTCGGTGGACACAAGGCCAGTCACCGGAAACTCGCAGCCGGCGCCGGCGAAGACCAGCCCACCTCCTCCGCCGCCACCGCTACCAGCTCCGCCAACACCACCTCCGGAGCTGGTAGGACCCACGAGTGCTCCATCTGCCACAAATCCTTCCCCACCGGACAGGCCCTGGGCGGACACAAACGTTGTCACTACGAAGGTAACGGTAACGGTAACGGAAATAATGTCACCGCCTCGGAAGGTGTGGGGTCCACCCACACCGTCAGTCACTCCCACCGCGACTTCGATCTCAATATCCCGGCTTTTCCGGATTTTTCGACCAAGGTCGGAGAAGACGAGGTTGAGAGCCCTCACCCAGTGATGAAGAAGCCGCGCCTCTTCGTGATTCCCAAGATCGAAATCCCTCAATTTCAATGA 693 0.5887 MALEALNSPTTAAPSFPFDDPTVPWAKRKRSKRSRDHPSEEEYLALCLIMLARGGTTRHVSSPPPPPQPTPDPSTKLSYKCSVCDKTFPSYQALGGHKASHRKLAAGAGEDQPTSSAATATSSANTTSGAGRTHECSICHKSFPTGQALGGHKRCHYEGNGNGNGNNVTASEGVGSTHTVSHSHRDFDLNIPAFPDFSTKVGEDEVESPHPVMKKPRLFVIPKIEIPQFQ 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00331 230 ProSitePatterns Zinc finger C2H2 type domain signature. 136 156 IPR013087 -
Pumo9g00331 230 MobiDBLite consensus disorder prediction 102 131 - -
Pumo9g00331 230 Pfam C2H2-type zinc finger 79 103 - -
Pumo9g00331 230 Pfam C2H2-type zinc finger 134 157 - -
Pumo9g00331 230 ProSiteProfiles Zinc finger C2H2 type domain profile. 134 156 IPR013087 -
Pumo9g00331 230 SMART c2h2final6 79 101 IPR013087 -
Pumo9g00331 230 SMART c2h2final6 134 156 IPR013087 -
Pumo9g00331 230 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 101 IPR013087 -
Pumo9g00331 230 SUPERFAMILY beta-beta-alpha zinc fingers 79 156 IPR036236 -
Pumo9g00331 230 Gene3D Classic Zinc Finger 77 156 - -
Pumo9g00331 230 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Pumo9g00331 230 MobiDBLite consensus disorder prediction 56 77 - -
Pumo9g00331 230 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 29 193 IPR044653 GO:0003700
Pumo9g00331 230 MobiDBLite consensus disorder prediction 1 40 - -
Pumo9g00331 230 MobiDBLite consensus disorder prediction 112 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00331 Pumo-Chr9 5198059 5199452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00331 1 226 C2H2 Transcription Factor Family AT1G27730 55.187 2.26e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo9g00331 zf-C2H2_6 1.6e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00331 9 5198059 5199452 Pumo10g00333 10 4460379 4461658 PCT