Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00310 ATGGCATCATCGGGAAGCAGGGAAATGGATCGGGTGAAGGGTCCATGGAGCCCAGAAGAGGACGAGGCGCTGCGGAGGCTGGTTCAGGCCCATGGGCCCAGAAACTGGTCGGTGATAAGCAAGTCCATTCCGGGGCGATCCGGGAAATCGTGCCGGTTGCGGTGGTGCAACCAGCTCTCGCCGCAGGTGGAGCACAGGCCCTTCTCTGCTGAGGAGGACCAGGCCATCGTCAGGGCCCACGCCAGGTTCGGTAACAAGTGGGCCACCATAGCCCGCTTACTCAACGGCCGCACCGATAACGCCGTTAAAAACCACTGGAACTCCACTCTCAAGAGAAAATGCTCTGACGTTAGTGACGACGTCGCGGATCGTCAGCCTCTTAAAAGATCCGCCAGCGTCGGCGCGGGCCACTTGAACCCCGGCAGCCCATCAGGGTCCGATTTGAGCGATCCGGGCCGGCCCGCTCTGTCCAACCCTTCCGCCTCGGCCCATTACAGGCCCAATCTGATGGAAACTGCTTCTTCGGCTGCCGATCCAGCCACGTTGCTGAGTTTGTGTCTCCCTGGGTTCGGGTCCGGGTCTAACCCGGTGGTTGAACCGCGACAAGCATCGCCTTCGCCGCCCCCGCTTCCGCCGCCGCCGCCGCCGGCGACGGTGGAGGAGCGTGGGAAGCAATTGTTCAACGCGGAGTTCTTGCGAGTGATGCAAGAGATGATTAGGAAGGAAGTGAGGAGTTACATGTCAGGGATGGAACAGAATAATGGTGGGTTCAGAATACAAACCGAAGCGATTGGGAACGCGGTGGTAAAGCGCATGGGAATTAGCAACATCGAGTGA 837 0.5986 MASSGSREMDRVKGPWSPEEDEALRRLVQAHGPRNWSVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSAEEDQAIVRAHARFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCSDVSDDVADRQPLKRSASVGAGHLNPGSPSGSDLSDPGRPALSNPSASAHYRPNLMETASSAADPATLLSLCLPGFGSGSNPVVEPRQASPSPPPLPPPPPPATVEERGKQLFNAEFLRVMQEMIRKEVRSYMSGMEQNNGGFRIQTEAIGNAVVKRMGISNIE 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00310 278 MobiDBLite consensus disorder prediction 128 163 - -
Pumo9g00310 278 Gene3D - 12 64 - -
Pumo9g00310 278 MobiDBLite consensus disorder prediction 1 20 - -
Pumo9g00310 278 Pfam Myb-like DNA-binding domain 16 74 - -
Pumo9g00310 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 114 IPR017930 -
Pumo9g00310 278 MobiDBLite consensus disorder prediction 194 220 - -
Pumo9g00310 278 MobiDBLite consensus disorder prediction 201 219 - -
Pumo9g00310 278 CDD SANT 15 57 IPR001005 -
Pumo9g00310 278 SMART sant 12 61 IPR001005 -
Pumo9g00310 278 SMART sant 64 112 IPR001005 -
Pumo9g00310 278 ProSiteProfiles Myb-like domain profile. 8 59 IPR001005 -
Pumo9g00310 278 PANTHER MYB PROTEIN-RELATED 13 174 - -
Pumo9g00310 278 MobiDBLite consensus disorder prediction 137 163 - -
Pumo9g00310 278 FunFam Transcription factor MYB44 67 113 - -
Pumo9g00310 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 63 IPR017930 -
Pumo9g00310 278 CDD SANT 67 110 IPR001005 -
Pumo9g00310 278 Gene3D - 66 132 - -
Pumo9g00310 278 SUPERFAMILY Homeodomain-like 10 106 IPR009057 -
Pumo9g00310 278 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Pumo9g00310 278 FunFam MYB transcription factor 13 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00310 Pumo-Chr9 4932800 4934530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00310 1 254 MYB Transcription Factor Family AT4G37260 51.736 1.76e-89 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo9g00310 Myb_DNA-bind_6 2.4e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00310 9 4932800 4934530 Pumo8g01988 8 56515210 56517426 ECH
Pumo9g00310 9 4932800 4934530 Pumo4g01920 4 25990746 25991606 ECH
Pumo9g00310 9 4932800 4934530 Pumo9g00310 9 4932800 4934530 ECH