Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00302 ATGGCACATCATTACCCAAAACCCCTTCTAGACACCCTCTACTGCTTAGAGGACCATTTTCATTGGGAGGAAGAACAAGATGATGAGTACAGTAGCACAACCACAGACTCTTCCTCTGTGGTTTTGTTAGAACACGACCTCTTCTGGGACCACGAGGAGCTATCTTCTCTTCTCGCCAAAGAACACCAAAATCAACTCTCCAACTCTCTCCAACACAACCCCGTTTTGGCTTCATCTCGAGAAGAAGCAGTGGAGTGGATTCTCAAAGTGAATGCCCATTATTCCTTTTCTACCCTCACCGCAGTTCTCGCTGTTAACTACTTCGACAGGTTCCTCTTCAGCTTCAGATTCCAGAACGATGACAAGCCTTGGCTCACACAACTAGCCGCAGTGGCTTGTCTCTCTCTCGCTGCCAAAGTTGAAGAGACCCACGTGCCCCTTTTTGTAGACCTCCAAGTGGAGGAGAGTAAGTACTTGTTTGAAGCGAAAACGGTTAAGAGAATGGAAATCTTGGTCCTTTCCACTCTTGGATGGAAGATGAACCCAGTAACACCTCTCTCGTTTCTTGATTATATCACAAGGAAACTTGGGTTAAAGGGTTATCTCTGCTGGGAGTTCCTCAGAAGGTGTGAAACCGTTCTTCTCTCTGTCTTTGCAGATTCGAGATTTATGGGTTATCTACCTTCTGTGTTGGCTACTGCTACAATGATGCGCGTGGTCAATATTGTAGAGCCTCGTCTACGAGTGGAGTACCAAGATCAGCTCTTAGGTATTCTTGGAATCGACAAGGAGAAGGTGGAAGAATGCTACAAGCTCATGATGGAGGTTGTGTCAGGGTACGATGAGCAAGGAATTAAACGATCGAAGTTGAAGAAACGCAAGTTTGAGTCGATTATTCCTTGTAGTAGCCAAAACGGCGTAATGGAAGGGTCGTTTAGCTGTGATAGTTCGAATGAGTCTTGGGAGTTAGGTGCATCTGTTTCATCCTCCAAGAAGACTAGGACTCAAGATCAGCTTCTATTGAACCATTCAAACTCAGATTTTCTAAGCATTCCTCGCTAG 1062 0.4548 MAHHYPKPLLDTLYCLEDHFHWEEEQDDEYSSTTTDSSSVVLLEHDLFWDHEELSSLLAKEHQNQLSNSLQHNPVLASSREEAVEWILKVNAHYSFSTLTAVLAVNYFDRFLFSFRFQNDDKPWLTQLAAVACLSLAAKVEETHVPLFVDLQVEESKYLFEAKTVKRMEILVLSTLGWKMNPVTPLSFLDYITRKLGLKGYLCWEFLRRCETVLLSVFADSRFMGYLPSVLATATMMRVVNIVEPRLRVEYQDQLLGILGIDKEKVEECYKLMMEVVSGYDEQGIKRSKLKKRKFESIIPCSSQNGVMEGSFSCDSSNESWELGASVSSSKKTRTQDQLLLNHSNSDFLSIPR 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00302 353 Gene3D - 55 271 - -
Pumo9g00302 353 SUPERFAMILY Cyclin-like 48 181 IPR036915 -
Pumo9g00302 353 CDD CYCLIN_AtCycD-like_rpt2 183 273 - -
Pumo9g00302 353 ProSitePatterns Cyclins signature. 80 111 IPR006671 -
Pumo9g00302 353 Gene3D - 67 181 - -
Pumo9g00302 353 PANTHER CYCLINS 54 277 IPR039361 -
Pumo9g00302 353 Pfam Cyclin, N-terminal domain 59 181 IPR006671 -
Pumo9g00302 353 SMART cyclin_7 85 174 IPR013763 -
Pumo9g00302 353 SMART Cyclin_C_2 183 302 IPR004367 -
Pumo9g00302 353 FunFam CYCLIN D32 182 271 - -
Pumo9g00302 353 FunFam D3-type cyclin 73 181 - -
Pumo9g00302 353 Pfam Cyclin, C-terminal domain 183 295 IPR004367 -
Pumo9g00302 353 SUPERFAMILY Cyclin-like 184 283 IPR036915 -
Pumo9g00302 353 CDD CYCLIN_AtCycD-like_rpt1 80 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00302 Pumo-Chr9 4830824 4832921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00302 9 294 Core Cell Cycle Gene Families AT4G34160 53.497 2.57e-98 294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00302 9 4830824 4832921 Pumo8g01985 8 56474942 56476842 ECH
Pumo9g00302 9 4830824 4832921 Pumo4g01924 4 26084487 26086400 ECH
Pumo9g00302 9 4830824 4832921 Pumo3g00614 3 9258452 9260745 ECH
Pumo9g00302 9 4830824 4832921 Pumo9g00302 9 4830824 4832921 ECH