Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00280 ATGAAGGTGCATCAGTTCGCACGTGGATTCTGGGAGCACGAACCCTCCCTCACACTTGGGTGCAAACGCTTACGCCCCCTTGCTCCCAAGCTTTCAAACACGGACACCACTACCACTCTTTCTCCACCTCCTGTTACAACTTTCGACCTCAAGAGCTTCATCAAACCTGAAAGTGCCTCCTGCAGAAAACTTGGATCCTCCGATGATAATAATAAGAGAGACCCACCTTCACCTCAGGGCCAGGTGGAAACGCATATTCCAGGAGGGACACGGTGGAATCCAACGCAAGAACAGATAGGGATATTGGAGATGCTGTATAGAGGAGGGATGCGAACTCCGAATGCTCAACAAATAGAGCAGATCACGGCACAGCTTAGCAAGTACGGCAAGATCGAAGGGAAGAACGTCTTCTATTGGTTCCAAAACCACAAAGCACGCGAGAGACAAAAGCAGAAGCGTAACAACCTAGGCCTTGCTCATAGTCCTCGTACTCCCACCACAATAGTGTCACCCCCCTTTAGTTGTAGTGTAATTACCACTTTGGACACGACAAAACGGGGGGAAGTAGTAGAAAGAGAGGAGGAAGATAGCCCGTTGAAGAAGTGTAGGAGCTGGGCATTTGAGTATTTGGAAGACCAAAGTTGGTCATCGTGGAAAGAGGAAGAACAAAGAACTCTGGAGCTTTTCCCATTGCACCCGGAAGGCAGATGA 711 0.4923 MKVHQFARGFWEHEPSLTLGCKRLRPLAPKLSNTDTTTTLSPPPVTTFDLKSFIKPESASCRKLGSSDDNNKRDPPSPQGQVETHIPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLSKYGKIEGKNVFYWFQNHKARERQKQKRNNLGLAHSPRTPTTIVSPPFSCSVITTLDTTKRGEVVEREEEDSPLKKCRSWAFEYLEDQSWSSWKEEEQRTLELFPLHPEGR 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00280 236 Pfam Homeodomain 90 149 IPR001356 GO:0003677
Pumo9g00280 236 PANTHER WUSCHEL-RELATED HOMEOBOX 4 1 236 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Pumo9g00280 236 MobiDBLite consensus disorder prediction 59 94 - -
Pumo9g00280 236 SUPERFAMILY Homeodomain-like 89 153 IPR009057 -
Pumo9g00280 236 Gene3D - 89 156 - -
Pumo9g00280 236 MobiDBLite consensus disorder prediction 71 94 - -
Pumo9g00280 236 CDD homeodomain 90 151 IPR001356 GO:0003677
Pumo9g00280 236 ProSiteProfiles 'Homeobox' domain profile. 95 150 IPR001356 GO:0003677
Pumo9g00280 236 SMART HOX_1 87 154 IPR001356 GO:0003677
Pumo9g00280 236 FunFam WUSCHEL-related homeobox 4 89 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00280 Pumo-Chr9 4548596 4550730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00280 1 156 Wox Gene Family AT1G46480 67.073 4.01e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Pumo9g00280 Homeodomain 5.8e-19 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00280 9 4548596 4550730 Pumo9g00280 9 4548596 4550730 ECH