Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00270 ATGGCTCTTCTACTTGACAACTGTGAAAGCATTTTGCTCTCTTTGGACACACACAAATCGGTTCCTGCACCTTTCCTTACCAAAACATACCAACTTGTAGACGACCCCTCCACCGACCACATAGTCTCTTGGGGCGAAGATGACACCACCTTCGTCGTTTGGAGACCCCCCGAGTTCGCTAGAGACCTTCTCCCCAACTATTTCAAACACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACTTATGGTTTTAGAAAGATTGTGCCTGATAGATGGGAGTTCGCGAACGAGTTCTTCAAGAAAGGAGAGAAGCACTTGTTGTGCGAGATCCACAGAAGGAAAACCCCTCAGCAGCATCATCAACAAGTACAAGCCATGAGCCATCACCATCATCAGTTTGGACTCAACGTTCCTCCTTTCTTTCCCTTCCACAACAGACTCAGCGTGTCCCCTCCCCACCATCATGACTCGGACGAGTTACCCAATTGGTGTGACTCGCCCCCAAGCGGAGTTGCAACTGTAAACAACAACAACATCAACATCAACATCAACAACAGCTACAACACTGTCACTGCACTTTCTGAGGACAACGAAAGACTTAGGAGAAGCAACAACATGCTCATGTCGGAGCTCGCACACATGAAGAAGCTTTACAACGACATCATCTACTTCGTTCAGAACCATGTCAAACCTGTGGCTCCCAGCAACACTTTCCCTTCTTTTCTACTCTGCAGTAATAATAGCAATGACAACACATCACCACAATCACAGCCACAAGCCTCTCCCTTGAGTAACGTTTCAACGGTGCAAAGGCCAGTGAAGCAGTTTGTGGGGTGCTATTCCAATAACACTAAGCAAGCGCGTGCTGTGAACTCTCCCACTAACAGCTCCATAACCATTGCTGAAGAAGAGCCTAGCAGTAACAGCTGCAAGACCAAGCTTTTCGGGGTGTCTCTTCAATCCAAGAAAAGGGTGCACCCAGAGTACGGATCTAACAATCTTCAAAGCTCCGAAACAAATAAGGCGCGTTTGGTTTTGGAAAATGATGAATTGTTAGGCTTGAATCTCATGCCCCCTTCAACTTGTTAG 1092 0.4707 MALLLDNCESILLSLDTHKSVPAPFLTKTYQLVDDPSTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTPQQHHQQVQAMSHHHHQFGLNVPPFFPFHNRLSVSPPHHHDSDELPNWCDSPPSGVATVNNNNINININNSYNTVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNTFPSFLLCSNNSNDNTSPQSQPQASPLSNVSTVQRPVKQFVGCYSNNTKQARAVNSPTNSSITIAEEEPSSNSCKTKLFGVSLQSKKRVHPEYGSNNLQSSETNKARLVLENDELLGLNLMPPSTC 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00270 363 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo9g00270 363 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 294 IPR027725 -
Pumo9g00270 363 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo9g00270 363 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo9g00270 363 FunFam Heat stress transcription factor B-4 17 115 - -
Pumo9g00270 363 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Pumo9g00270 363 Coils Coil 191 211 - -
Pumo9g00270 363 Gene3D - 17 116 IPR036388 -
Pumo9g00270 363 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo9g00270 363 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo9g00270 363 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00270 Pumo-Chr9 3988214 3989740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00270 1 362 HSF AT1G46264 54.830 4.75e-116 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pumo9g00270 HSF_DNA-bind 2.5e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00270 9 3988214 3989740 Pumo9g00270 9 3988214 3989740 ECH