Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00262 ATGATGCGGAACTTGGAGCGCCGAGAAACTGAGTACATGAGGCATCAGAGACGTAAAATTGGAATTGATGACTTCGAGCAGTTAACGGTGATTGGGAAAGGTGCTTTCGGTGAGGTGAGGTTATGTCGTGCTAAAGGTTCGGGAGAGATTTTTGCCATGAAGAAATTGAAGAAGTCAGAGATGCTTAGTCGTGGACAGGTGGAACACGTTCGATCTGAGAGGAACTTGCTGGCAGAGGTTGATAGCAGATGCATAGTCAAACTCCATTATTCATTCCAAGATTCAGATTTCCTATATCTCATCATGGAATATTTACCTGGTGGTGACATTATGACATTGCTAATGAGGGAAGATATTCTTTCTGAAGATGTTGCTCGCTTCTACATTGCTGAAAGCATTCTTGCTATTCACTCAATACATCAACACAACTATGTACATAGGGATATTAAACCAGATAACCTGATACTGGATAAAAATGGCCATTTGAAGCTTTCAGACTTTGGCTTATGTAAGCCTCTTGATGATAAGTATTCATCAATTTTATTGGAAAATGAAGATCTTACCGGTCAAGAATCAACTAGTGAAACTGAAGGATATTCTGCCTCTCCTTGGTTGATGCCAAAGGAGCAATTACAGCAGTGGAAACGTAATCGCCGGGCATTGGCGTATTCAACTGTTGGAACTCTTGATTATATGGCACCTGAAGTTTTGCTCAAGAAGGGCTATGGAATAGAATGTGATTGGTGGTCTCTTGGGGCGATCATGTATGAGATGCTCATTGGGTATCCTCCATTTTGTTCCGATGATCCAAGGATGGCCTGCCGTAAGATTGTTAACTGGAAAACATGCCTGAAATTCCCTGATGAACCCAAGATATCAGCTGAAGCAAAGGATCTGATCTGTTGCTTACTATGTGATGTTGACTCAAGGCTAGGAACCAGAGGAGTAGAAGAAATAAAGGCTCATCCATGGTTCAAGGGTATTCAGTGGGACATGCTTTATGAATCAGAAGCTGCATATAAACCTACGGTCTCTGGGGACTTGGATACTCAAAATTTTGAGAAGTTTCCTGAAGTCGATGGCCCACCATCTGTAACAGCAACTGTTGGACCTTGGCGGAAGATGCTGACGTCCAAAGATAACAATTTCATAGGATATACTTTTAAGAAGTCAGACATCCTTAAATCACTTGAAAGTTCAGATTCAGAGATCAGAGTAAACGGATCATCAAAAGCCCCTTCCTTGATTACCTTATTAGGTCGGATTGATTTGCAAGATACTGTAATATCAGAAAGTGAGCAGAAGCCAGAAGCTTGA 1317 0.4153 MMRNLERRETEYMRHQRRKIGIDDFEQLTVIGKGAFGEVRLCRAKGSGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLHYSFQDSDFLYLIMEYLPGGDIMTLLMREDILSEDVARFYIAESILAIHSIHQHNYVHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSSILLENEDLTGQESTSETEGYSASPWLMPKEQLQQWKRNRRALAYSTVGTLDYMAPEVLLKKGYGIECDWWSLGAIMYEMLIGYPPFCSDDPRMACRKIVNWKTCLKFPDEPKISAEAKDLICCLLCDVDSRLGTRGVEEIKAHPWFKGIQWDMLYESEAAYKPTVSGDLDTQNFEKFPEVDGPPSVTATVGPWRKMLTSKDNNFIGYTFKKSDILKSLESSDSEIRVNGSSKAPSLITLLGRIDLQDTVISESEQKPEA 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00262 438 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 377 - -
Pumo9g00262 438 Pfam Protein kinase domain 25 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g00262 438 ProSiteProfiles Protein kinase domain profile. 25 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g00262 438 FunFam Non-specific serine/threonine protein kinase 224 343 - -
Pumo9g00262 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Pumo9g00262 438 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Pumo9g00262 438 SMART serkin_6 25 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g00262 438 Gene3D Phosphorylase Kinase; domain 1 12 108 - -
Pumo9g00262 438 Pfam Protein kinase C terminal domain 344 388 IPR017892 GO:0004674|GO:0005524|GO:0006468
Pumo9g00262 438 Gene3D Transferase(Phosphotransferase) domain 1 109 176 - -
Pumo9g00262 438 Gene3D Transferase(Phosphotransferase) domain 1 222 345 - -
Pumo9g00262 438 ProSiteProfiles AGC-kinase C-terminal domain profile. 326 398 IPR000961 GO:0004674|GO:0005524|GO:0006468
Pumo9g00262 438 SUPERFAMILY Protein kinase-like (PK-like) 9 377 IPR011009 -
Pumo9g00262 438 CDD STKc_NDR_like 23 389 - -
Pumo9g00262 438 SMART pkinase_C_6 326 390 IPR000961 GO:0004674|GO:0005524|GO:0006468
Pumo9g00262 438 FunFam Non-specific serine/threonine protein kinase 1 108 - -
Pumo9g00262 438 FunFam Non-specific serine/threonine protein kinase 109 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00262 Pumo-Chr9 3887285 3894214 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00262 1 426 AGC Kinase Gene Family AT5G09890 80.653 0.0 729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Pumo9g00262 Pkinase 2.9e-64 CL0016