Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00215 ATGAAACGATCCTCTTCATCCTCTTCTTCTTCGGAATCCACCCCACGAAGCAACGATAATATTTGTTACAAAATAAAAGGCCCGTGGAGTGCGGAGGAGGATCGGATCCTGACCGGGCTCGTGGAGGCCCATGGGCCGCGAAACTGGGCCTTGATAAGCCGTTACATTAAGGGGCGGTCTGGGAAGTCCTGCAGGCTTCGGTGGTGTAACCAACTGAGTCCAACGGTGGAGCACCGACCCTTCTCCACGCGCGAGGACGAGGTTATCCTGCACGCGCACACGCGGTTCGGGAACAAGTGGGCCACCATTGCGAGAATGCTACCGGGCCGAACCGATAATGCCGTTAAGAACCACTGGAACGCCACGCTCAAACGGAGGGCCTCATCAATCACAACGGCGTCGTTTTCATGCTGA 414 0.5628 MKRSSSSSSSSESTPRSNDNICYKIKGPWSAEEDRILTGLVEAHGPRNWALISRYIKGRSGKSCRLRWCNQLSPTVEHRPFSTREDEVILHAHTRFGNKWATIARMLPGRTDNAVKNHWNATLKRRASSITTASFSC 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00215 137 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 127 IPR017930 -
Pumo9g00215 137 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 76 IPR017930 -
Pumo9g00215 137 SMART sant 25 74 IPR001005 -
Pumo9g00215 137 SMART sant 77 125 IPR001005 -
Pumo9g00215 137 CDD SANT 80 123 IPR001005 -
Pumo9g00215 137 ProSiteProfiles Myb-like domain profile. 26 72 IPR001005 -
Pumo9g00215 137 Pfam Myb-like DNA-binding domain 26 72 IPR001005 -
Pumo9g00215 137 Pfam Myb-like DNA-binding domain 80 120 IPR001005 -
Pumo9g00215 137 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Pumo9g00215 137 FunFam MYB transcription factor 26 77 - -
Pumo9g00215 137 Gene3D - 79 135 - -
Pumo9g00215 137 PANTHER MYB PROTEIN-RELATED 26 127 - -
Pumo9g00215 137 Gene3D - 25 77 - -
Pumo9g00215 137 SUPERFAMILY Homeodomain-like 24 119 IPR009057 -
Pumo9g00215 137 CDD SANT 28 70 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00215 Pumo-Chr9 3238779 3239664 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo9g00215 Myb_DNA-binding 4e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00215 9 3238779 3239664 Pumo9g00215 9 3238779 3239664 ECH