Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00197 ATGATGGGGTGTGACTATGGGGGGAAGTTAAATGTGAGAAAGCCTCATTTCTATGAGGTTTATTCCTCTGCCTTCAGCTCTCACAGACTGAAAATTCCCGATGGATTTGTCTGTCACATGGAGGGAAGGACACATGGATCAGTTTCGTTGACTGGTCCTAGTGGAAACACATGGACAGTGCAATTGATTAAGCAGGACAATGATCTATTCTTCCATCATGGATGGTCGACATTTGTGGTGGATCATCGACTAGAATGTGGTGAACTTTTGGTTTTCAGATATGAGGGTCACTTGCATTTTACCGTGCAAGTATTTGATAAGGATGCATGTGAGAAAGAGGCAGCGTTTCATTCTGAATGCAGTCAAAGTTCAAACGACTTTGATAATATTAAAGGGCAGAAAAGAGATACAAGGGAGAATTCTTCTTTGGATATTGTTGTTGATGGTGTTCCAAAGAAAATGAGAGGTAGTACCGATGAGAACCAGGAACTTGAACTGGGTGTTGTTGGTAAAGAACCATTGCGATATGAAGTAGTAAGACCAGTTAGTATGTTCAGAGAAAACGAAGAAACGTCCAAAGCATGTTCCGCTAATCACACCCCTGTGCCTTTTCACATGGAAAATAGCAAAGGAGATGAAGAGGCTGCCATGCTGTATAGAAGTGGGAAGGACGATGATCGTTATATTCTCAGTGGAGTTTCATTATCAAATGTATCAGCACATGATGAGAAAAAAGTTGCCCAGTCATTTATTTCCGCTTTTCCATATTTTGTTAGAATCATGAAAAGCTTCAATGTCAGTGGTTCATATACTCTGAATATCCCATATCAGTTTTCAATGGCACATCTTCCCAATTGCAAGATAAAGATTATTCTTCATAATTTGAAAGGAGAACATTGGACTGTTAATTCTGTGCCAACAACTAGAGTACATACTAGTCACACTCTTTGTGGAGGATGGATGGCTTTTGTTCGTGGTAATAACATAAAGGTTGGAGATATCTGTATTTTTGAGCTTGTGCATGAGTGTGAATTACGTGTTCGCATTGCTGAGGTTGGAAAAGATGGGCCAGACTGCCAGGTTGGAAAAGTAGCCATTGGTAGGCCTAGTGCAGGACATGCTGTAACTTCCAGATATATGCCAATGAATCCTAAAGTCAACTCGAAATGCATAAGAAAAGTTGATCTATCGGATAAAAAGTGGTCAAAGATTGGTCAAGAAACTATTTTATCCATTGACTTAAAGAAATCTAGTAAAGCTTCAAATACTTCTAAGAAGATGGGGCTTTGCCCTCAGTCGAAAGCTGCCCATAAGAAGTTGGCTGCTCCAAGGAGACATCGTGTTGAAGATGAACTAAGCTCACAGGCTAAAGCTGGTTTGAGAATGTTGTTTGCACTCGATGAACAAAGAGTAGCTCAAGCTTTTACTTCCCCTTTTCCTAGTTTTGTGAAAATCATGAAAAAGTTCAATGTCAGTGGATCATACACTTTGAAAATCCCATACCAGTTCTCAGCTGCACATCTCCCAACTTACAAAACTGAAGTTATACTTCGTAATTCAAGAGGTGAATGTTGGACTGTGAACTCGGTCCCAGATGCAAAAGGCAGAACAGTTCACACGTTTTGTGGGGGATGGATGGCCTTTGTTCGTGATAATGACATCAATTTTGGAGACACATGCATTTTTGAACTCGTTGCTCAATGTGAGATGCAAGTTTACATATCTGGGGTTGGAAAAGAAGGGCTTGACCATCAAAATGGGCATTTAAAACTTAATAGATTAGCTAACGTTTCATCTACCTGCTAA 1806 0.4009 MMGCDYGGKLNVRKPHFYEVYSSAFSSHRLKIPDGFVCHMEGRTHGSVSLTGPSGNTWTVQLIKQDNDLFFHHGWSTFVVDHRLECGELLVFRYEGHLHFTVQVFDKDACEKEAAFHSECSQSSNDFDNIKGQKRDTRENSSLDIVVDGVPKKMRGSTDENQELELGVVGKEPLRYEVVRPVSMFRENEETSKACSANHTPVPFHMENSKGDEEAAMLYRSGKDDDRYILSGVSLSNVSAHDEKKVAQSFISAFPYFVRIMKSFNVSGSYTLNIPYQFSMAHLPNCKIKIILHNLKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNNIKVGDICIFELVHECELRVRIAEVGKDGPDCQVGKVAIGRPSAGHAVTSRYMPMNPKVNSKCIRKVDLSDKKWSKIGQETILSIDLKKSSKASNTSKKMGLCPQSKAAHKKLAAPRRHRVEDELSSQAKAGLRMLFALDEQRVAQAFTSPFPSFVKIMKKFNVSGSYTLKIPYQFSAAHLPTYKTEVILRNSRGECWTVNSVPDAKGRTVHTFCGGWMAFVRDNDINFGDTCIFELVAQCEMQVYISGVGKEGLDHQNGHLKLNRLANVSSTC 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00197 601 CDD B3_DNA 255 349 IPR003340 GO:0003677
Pumo9g00197 601 CDD B3_DNA 480 574 IPR003340 GO:0003677
Pumo9g00197 601 CDD B3_DNA 22 106 IPR003340 GO:0003677
Pumo9g00197 601 ProSiteProfiles B3 DNA-binding domain profile. 257 353 IPR003340 GO:0003677
Pumo9g00197 601 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 28 356 IPR044837 -
Pumo9g00197 601 SUPERFAMILY DNA-binding pseudobarrel domain 254 350 IPR015300 -
Pumo9g00197 601 Pfam B3 DNA binding domain 257 349 IPR003340 GO:0003677
Pumo9g00197 601 Pfam B3 DNA binding domain 482 569 IPR003340 GO:0003677
Pumo9g00197 601 Pfam B3 DNA binding domain 22 107 IPR003340 GO:0003677
Pumo9g00197 601 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677
Pumo9g00197 601 ProSiteProfiles B3 DNA-binding domain profile. 482 578 IPR003340 GO:0003677
Pumo9g00197 601 SUPERFAMILY DNA-binding pseudobarrel domain 11 110 IPR015300 -
Pumo9g00197 601 Gene3D - 9 110 IPR015300 -
Pumo9g00197 601 Gene3D - 238 353 IPR015300 -
Pumo9g00197 601 Gene3D - 467 577 IPR015300 -
Pumo9g00197 601 SUPERFAMILY DNA-binding pseudobarrel domain 475 576 IPR015300 -
Pumo9g00197 601 SMART B3_2 482 578 IPR003340 GO:0003677
Pumo9g00197 601 SMART B3_2 17 108 IPR003340 GO:0003677
Pumo9g00197 601 SMART B3_2 257 353 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00197 Pumo-Chr9 2847646 2851651 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo9g00197 B3 4.7e-13 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00197 9 2847646 2851651 Pumo9g00197 9 2847646 2851651 ECH