Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00182 ATGGGTTGGCTTAGCAGAATTTTTAAAGGCTCCGACCAAAAGATTTCTGAAGGGCATTACTATAAAGAGGATGCGGGTTATTATTTGCCATCCACTTCAGGGGTAACAAATGATGCTTGGAACCAGAACCAGAACGAGAATGAAGATATTGATCGTGCTATTGCACTGTCTCTGGTGGAAGAGAGTCAGAAAGCAAACAATGTAAATGACTACAGATCACAATTAGAAGAAGATGAACAACTTGCAAGAGCTATGGAACAAAGTCTTAATGTGGATTCTCCTCCCAGATATGGAAATGAAAATATGTATCAACCAATTCAGTATTTCCCGATGGGATCCAGGATTTGTGCTGGCTGCTATACTGAGATTGGTTATGGACGATATCTAAATTGCTTGAATGCATTCTGGCATCCTGAATGCTTCCGCTGCCGTGCTTGCAACTTACCAATCTCTGATTATGAGTTCTCCACATCTGGGAATTACCCTTACCATAAATCATGCTATAAGGAAAGCTACCATCCAAAATGTGATGTCTGCAAGCACTTCATTCCAACAAATCCTGCTGGTCTTATTGAATATAGGGCACATCCATTCTGGATCCAGAAATATTGCCCTTCTCATGAACACGATGGTACTCCACGCTGTTGCAGCTGTGAGCGAATGGAGTCGCAAGAGGCAGGATATATTGCTCTTAAGGATGGCCGGAAGCTCTGCTTAGAGTGTCTGGATTCTGCTATCATGGATACTAATGAATGCCAACCCCTTTATGCTGATATACAAAGATTTTATGAAAGCCTAAATATGAAACTGGACCAGCAAATTCCACTACTATTGGTTGAAAGACAAGCACTGAATGAAGCAAGAGAGGGAGAGAAGAATGGACACTATCACATGCCGGAAACCAGAGGGCTCTGCCTCTCAGAGGAGCTCAGCACTATCTCGAGACGACCTAGACTTGGGACAGGAAATGGAGCAATGGACATGAGAGGACAGCCATACAGAGTGACTCCACGCTGCGACGTGACAGCAATTCTCATTTTATATGGTCTTCCAAGATTGCTTACTGGATCGATCCTAGCTCATGAGATGATGCATGCATGGCTGCGGCTTAAAGGTTATCGGACTCTAAGTCAAGATGTTGAAGAAGGTATCTGTCAAGTTTTGGCTCATATGTGGTTGGAGTCTGAACTTTCTTCTGCATCAGGCAGCAACTTTGTATCAGCCTCATCCTCATCTGCATCACATACATCTAGAAAAGGTAAAAGACCTCAGTTTGAGAGGAAGCTTGGGGAGTTCTTCAAGCACCAGATTGAATCAGACATTTCCCCTGTTTATGGAGATGGGTTTAGGGCAGGTCAAAAAGCAGTGCGTAAATATGGTCTACCAAGGACCCTTCACCATATCAAGATGACGGGAACTTTTCCATATTAA 1431 0.4326 MGWLSRIFKGSDQKISEGHYYKEDAGYYLPSTSGVTNDAWNQNQNENEDIDRAIALSLVEESQKANNVNDYRSQLEEDEQLARAMEQSLNVDSPPRYGNENMYQPIQYFPMGSRICAGCYTEIGYGRYLNCLNAFWHPECFRCRACNLPISDYEFSTSGNYPYHKSCYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWIQKYCPSHEHDGTPRCCSCERMESQEAGYIALKDGRKLCLECLDSAIMDTNECQPLYADIQRFYESLNMKLDQQIPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEELSTISRRPRLGTGNGAMDMRGQPYRVTPRCDVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYRTLSQDVEEGICQVLAHMWLESELSSASGSNFVSASSSSASHTSRKGKRPQFERKLGEFFKHQIESDISPVYGDGFRAGQKAVRKYGLPRTLHHIKMTGTFPY 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00182 476 SMART lim_4 115 167 IPR001781 -
Pumo9g00182 476 PANTHER PROTEIN DA1-RELATED 2 3 476 IPR045218 -
Pumo9g00182 476 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 109 141 - -
Pumo9g00182 476 Coils Coil 68 88 - -
Pumo9g00182 476 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 76 95 IPR003903 -
Pumo9g00182 476 Pfam Ubiquitin interaction motif 46 58 IPR003903 -
Pumo9g00182 476 Pfam Ubiquitin interaction motif 76 89 IPR003903 -
Pumo9g00182 476 ProSitePatterns LIM zinc-binding domain signature. 116 150 IPR001781 -
Pumo9g00182 476 ProSiteProfiles LIM domain profile. 114 174 IPR001781 -
Pumo9g00182 476 FunFam Protein DA1-related 1 110 169 - -
Pumo9g00182 476 Pfam LIM domain 116 170 IPR001781 -
Pumo9g00182 476 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 45 64 IPR003903 -
Pumo9g00182 476 CDD LIM_DA1 116 168 - -
Pumo9g00182 476 Pfam Protein DA1 266 471 IPR022087 -
Pumo9g00182 476 Gene3D Cysteine Rich Protein 111 175 - -
Pumo9g00182 476 SMART uim 76 95 IPR003903 -
Pumo9g00182 476 SMART uim 45 64 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00182 Pumo-Chr9 2505918 2513568 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo9g00182 DA1-like 2.3e-95 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00182 9 2505918 2513568 Pumo9g00182 9 2505918 2513568 ECH