Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00145 ATGTCGATATCAATATCATTATCCTCAGTCCCCGCGCGTCTCACACTCCTCGCTCTCTTCTCCGCCACCACATTCTACTGCCTCTACAAATCTCGCCGCTTAAGACACCTCAAACTCTCCCTAAACCCTAACCCTAACCCTAAGCCTAATCCTAAGATTCTCTTTCTCTCCGAAACCGGCACCTCCAAAGCCCTCGCTCGGCGCCTCCAGCGCCTCCTCGCCTCCAACGACGTCGCATTCGACCTCGTCGATTCGCAGCACTACGAGCCAGAGGACCTCCCCAAGGAGACGCTCATCCTCCTCGTCGCCTCCACGTGGCAGGACGGCGCTCCCCCCGCCGCTTCCCGCTTCTTCGCCACCTGGCTCGCCGACGCCGCCGCCGACTTCCGCGCCGGCTCCCTCCTCCTCTCGCGCTGCCGCTTCGCCGTCTTCGGCGTTGGGAGCCGAGCCTACGGAGAATCCTTCAACGCCGTCGCGAAGGGCCTCGCGAAGCACCTGAGGGCGCTCGGCGCCAAGGAGGTGGTTCCGCTTTGCGAAGGGGATGTTGACGGTGGTGACGTGGACGGGGTTTTTGATCGGTGGTGTGAGAAGGTGGTGGCGGTTTTGAAAGGCGGTGGTGTTGTGGAAAGCGGAGATAATGATGGTGCTGAGGAATGTGGCGTCGTTTCGAGTTCTGAAGAGGAGTCTGATGTGGAGAGTAATGATATTGTTGATCTTGAGGACATTGCTGGTAAAGCTCCTTCGCGGAAGGCAGTGGCTAATGGGGAAGAGAGCAATGGGAAGTTGAATGGCAGAAGAGAAATGGTGACTCCGGTGATTCGAGCAAATTTAGAGAAGCAGGGGTATAAAATTATTGGGTCGCATAGTGGTGTCAAGCTTTGTAGATGGACCAAGGCGCAGCTTCGAGGTCGAGGTGGTTGCTATAAGCACTCGTTTTATGGAATTGAGAGTCACAGATGCATGGAGGCAACCCCTAGCTTGGCATGCGCAAATAAATGTGTTTTCTGCTGGAGGCATCACACAAATCCAGTAGGGAAAAGTTGGCAGTGGCAGATGGATGATCCATTAGAGATTGTAAATTCTGCAATAGACCTGCATACAAATATGATTAAACAAATGAAAGGAGTTCCTGGAGTCACCTTGGAGCGATTAACTGAAGGTCTCTCACCACGTCATTGTGCATTATCTCTTGTTGGTGAACCTATTATGTATCCAGAGATAAATGCACTTGTGGATGAGCTGCACAAAAGGAGGATTTCCACTTTTCTAGTTACAAATGCACAATTTCCCGAGAAAATTAAGTCACTGAAACCTGTCACCCAGTTATATGTAAGTGTAGATGCTGCAACAAAGGACTCTTTGAAGGCAATTGATAGACCACTCTTTGGAGATTTCTGGGAGCGATTCATTGATTCCTTGACTGCTCTAAAGGAAAAACATCAGCGAACTGTATACCGCCTGACCCTGGTGAAAGGTTGGAATACTGAAGATGTTGATGCTTATTCTAAGCTCTTTAGTTTAGGAGAACCTGACTTTGTTGAAATCAAGGGAGTTACATATTGTGGCTCGTCCACTACGTCAAAATTGACAATGGAAAATGTCCCTTGGCATACTGATGTGAAAGCTTTTTCTGAGGCCCTAGCTTTGAAAAGCCAAGGAGAGTATGAAGTCGCATGTGAGCATGCTCACTCGTGTTGTGTCCTCTTAGCAAAAACTAATAAGTTCAAAATTGATAGCCAGTGGTATACATGGATAGACTATGAAAAATTTCATGATCTGGTGGCATCTGGAAGAATTTTTGACAGCAGAGATTACATGACTGCCACACCATCGTGGGCTGTCTATGGATCAGAGGAAGGTGGATTTGATCCAGGACAATTGAGATACAGGAAAGAGAGACATCACAAGTCGACCCGCAATCAAGCAGGTTAG 1932 0.4928 MSISISLSSVPARLTLLALFSATTFYCLYKSRRLRHLKLSLNPNPNPKPNPKILFLSETGTSKALARRLQRLLASNDVAFDLVDSQHYEPEDLPKETLILLVASTWQDGAPPAASRFFATWLADAAADFRAGSLLLSRCRFAVFGVGSRAYGESFNAVAKGLAKHLRALGAKEVVPLCEGDVDGGDVDGVFDRWCEKVVAVLKGGGVVESGDNDGAEECGVVSSSEEESDVESNDIVDLEDIAGKAPSRKAVANGEESNGKLNGRREMVTPVIRANLEKQGYKIIGSHSGVKLCRWTKAQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWQMDDPLEIVNSAIDLHTNMIKQMKGVPGVTLERLTEGLSPRHCALSLVGEPIMYPEINALVDELHKRRISTFLVTNAQFPEKIKSLKPVTQLYVSVDAATKDSLKAIDRPLFGDFWERFIDSLTALKEKHQRTVYRLTLVKGWNTEDVDAYSKLFSLGEPDFVEIKGVTYCGSSTTSKLTMENVPWHTDVKAFSEALALKSQGEYEVACEHAHSCCVLLAKTNKFKIDSQWYTWIDYEKFHDLVASGRIFDSRDYMTATPSWAVYGSEEGGFDPGQLRYRKERHHKSTRNQAG 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00145 643 Pfam Radical SAM superfamily 325 503 IPR007197 GO:0003824|GO:0051536
Pumo9g00145 643 PRINTS Flavodoxin signature 163 182 IPR001094 GO:0010181
Pumo9g00145 643 PRINTS Flavodoxin signature 52 65 IPR001094 GO:0010181
Pumo9g00145 643 PRINTS Flavodoxin signature 100 111 IPR001094 GO:0010181
Pumo9g00145 643 PRINTS Flavodoxin signature 138 148 IPR001094 GO:0010181
Pumo9g00145 643 CDD Radical_SAM 325 501 - -
Pumo9g00145 643 SUPERFAMILY Radical SAM enzymes 326 506 - -
Pumo9g00145 643 Gene3D - 30 210 IPR029039 -
Pumo9g00145 643 Pfam Flavodoxin 53 184 IPR008254 GO:0010181
Pumo9g00145 643 Pfam Wyosine base formation 508 571 IPR013917 -
Pumo9g00145 643 ProSiteProfiles Flavodoxin-like domain profile. 51 199 IPR008254 GO:0010181
Pumo9g00145 643 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 41 638 IPR034556 GO:0008033|GO:0051539
Pumo9g00145 643 Gene3D Aldolase class I 254 583 IPR013785 -
Pumo9g00145 643 ProSiteProfiles Radical SAM core domain profile. 313 556 IPR007197 GO:0003824|GO:0051536
Pumo9g00145 643 FunFam S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase 256 585 - -
Pumo9g00145 643 SFLD tRNA wybutosine-synthesizing 265 575 IPR034556 GO:0008033|GO:0051539
Pumo9g00145 643 SFLD tRNA wybutosine-synthesizing 265 575 - -
Pumo9g00145 643 SUPERFAMILY Flavoproteins 51 202 IPR029039 -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00145 9 2010123 2016150 Pumo9g00145 9 2010123 2016150 ECH