Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00132 ATGCCATTCAGGAGCATTGTGCGTGAGCTCAAGGAGATTGGAGAGGGCATCAGCAACATGTATAGAAGAGGGGGAGAAGCCAAGCATGTGCATCGCCATGGAAAATCTCACATTGCACCAGAATGTTCCTTACCATCATCATCATCATCATCATCTTCTTCATCATCATCATCATCACAGAGCCGGTGGGCTAACTTGCCACCTGAGTTGCTATTGGACATAATTCAAAGGTTGGAAGCTAGTGAAACTTCCTGGCCTGCACGTAGAGCACTTGTGGCATGTGCCTCAGTTTGTAGGCTGTGGAGAGAGATAACAAAGGATGTGATCAAGACACCAGAACAGTGTGGTTTGCTCACTTTCCCCATATCACTAAAGCAGCCTGGTCCAAGAGACTCTCCAATCCAGTGTTTTATTAGGAGAGAAAGAATGACTTCAACATATTGTTTATATCTCGGCCTGAGCCCTGCTCTTTCTGGTGATATGAGCAAACTGTTACTGGCAGCAAAGAAGATTAGAAGGGCAACATGTACAGAATTTATAGTATCATTGGTTGCTGATGATTTCTCTCGAGCTAGCAACACTTACGTTGGAAAGCTGAGGTCTAATTTTCTGGGCACCAAGTTCACGATCTTGGATGGCGAGCCCCCGCATGATTCTTCACTTCCACTGAATTGCAAGTTGCAGCAAAGAGTCCATCTGAAGCAGGTACTTCCTAAGGTTGCTGCTGCTAACTACAAGGTTGCCACAGTATCTTATGAACTCAATGTCCTCCGAACAAGAGGTCCAAGGAGAATGCGGTGTACGATGCACTTAATCCCCATATCTGCAATCCAAGAAGGAGGGACTGCCCCTACTCCTTTGAAGTTTACCAATTACCTTAATGAGCATGCATCTAGCACCACCGAACTTGCATCTATCACCACCCAAGATTCAAAAGGAAAGAAGCCAGAAGTTGAGTTTGACTCAAGTGGCATTGAGAACACTCAAGAATCAACCCAGAGGGCAAGAGAACCATTGGTTTTGAAAAACAAAGCTCCTAGATGGCATGAACAACTTCAATGTTGGTGCTTGAATTTCAAGGGAAGGGTTACAGTGGCCTCTGTGAAGAACTTCCAGCTTGTAGCAGCTGCTGAACCATGCCAAAATGTTTCAGCTGCAGAACAAGAAAAAGTGATACTACAATTTGGAAAAATTGGGAAGGACATATTCACCATGGATTACCGATATCCCCTCTCAGCTTTCCAAGCCTTTGCAATATGCTTGAGCAGCTTTGACACAAAACCAGCTTGTGAATGA 1296 0.4475 MPFRSIVRELKEIGEGISNMYRRGGEAKHVHRHGKSHIAPECSLPSSSSSSSSSSSSSSQSRWANLPPELLLDIIQRLEASETSWPARRALVACASVCRLWREITKDVIKTPEQCGLLTFPISLKQPGPRDSPIQCFIRRERMTSTYCLYLGLSPALSGDMSKLLLAAKKIRRATCTEFIVSLVADDFSRASNTYVGKLRSNFLGTKFTILDGEPPHDSSLPLNCKLQQRVHLKQVLPKVAAANYKVATVSYELNVLRTRGPRRMRCTMHLIPISAIQEGGTAPTPLKFTNYLNEHASSTTELASITTQDSKGKKPEVEFDSSGIENTQESTQRAREPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPCQNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00132 431 Gene3D - 56 109 - -
Pumo9g00132 431 MobiDBLite consensus disorder prediction 41 62 - -
Pumo9g00132 431 ProSitePatterns Tub family signature 2. 416 431 IPR018066 -
Pumo9g00132 431 Pfam Tub family 124 426 IPR000007 -
Pumo9g00132 431 CDD F-box_AtTLP-like 63 107 - -
Pumo9g00132 431 MobiDBLite consensus disorder prediction 303 336 - -
Pumo9g00132 431 SUPERFAMILY Tubby C-terminal domain-like 112 431 IPR025659 -
Pumo9g00132 431 Gene3D Tubby Protein; Chain A 122 431 IPR025659 -
Pumo9g00132 431 MobiDBLite consensus disorder prediction 26 62 - -
Pumo9g00132 431 PRINTS Tubby superfamily signature 244 271 IPR000007 -
Pumo9g00132 431 PRINTS Tubby superfamily signature 341 358 IPR000007 -
Pumo9g00132 431 PRINTS Tubby superfamily signature 388 407 IPR000007 -
Pumo9g00132 431 PRINTS Tubby superfamily signature 409 431 IPR000007 -
Pumo9g00132 431 PRINTS Tubby superfamily signature 179 195 IPR000007 -
Pumo9g00132 431 PRINTS Tubby superfamily signature 359 375 IPR000007 -
Pumo9g00132 431 PRINTS Tubby superfamily signature 195 219 IPR000007 -
Pumo9g00132 431 PANTHER TUBBY-RELATED 38 429 - -
Pumo9g00132 431 SUPERFAMILY F-box domain 51 107 IPR036047 GO:0005515
Pumo9g00132 431 MobiDBLite consensus disorder prediction 322 336 - -
Pumo9g00132 431 ProSitePatterns Tub family signature 1. 359 372 IPR018066 -
Pumo9g00132 431 Pfam F-box domain 63 108 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00132 Pumo-Chr9 1904537 1910398 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pumo9g00132 Tub 2.5e-105 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00132 9 1904537 1910398 Pumo9g00132 9 1904537 1910398 ECH