Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00106 ATGAGCGGTGCATTCCTCTACGGTTCGGTTATTCATCCATTGATTCAACAACGCTATCATTATTTATCACCACCAATCCCTATTCGCCCATTATGCATATCCCCTCTCACCACCTCCGTGCTCCAACGCGATTCTGCGGTTGAACTCGCGTCCTCGTCTATTGACTCCAACGACGCCGTTTCACCGCAAAACGGAACGGTTCAGCAGCACAACGAAGAAGCGGCTCCCGTTCCGTCGCTCCCTGCCGAAGAAAACAAAGCAACAACGAGGTTTCGAAAGAAGAAGGAAGACGACGTCGTTTCCGATAACCGCTTCAAGCTCCGCAACGGAAGACAGGTTTTTGAAGAAAAAGCGTACCTCGTGGGCGTTGAGCGCAAGAACGATGTTCAGGATTTTGGTATCGAAGAATCTCTGAGCGAACTGGCGCAGTTAGCTGACACTGCTGGATTATTGGTTGTTGGCTCTACTTACCAGAAGCTTACTTCTCCAAATCCTAGGACGTACATTGGCTCTGGCAAGGTTTCTGAAATTAAGAGTGCAATTCATGCATTGGGCGTTGAAACTGTTATCTTTGATGATGAGCTGTCAGCTGGGCAATTGCGCAACTTGGAAAAGATTTTTGGTGGAGATGTGAGAGTTTGTGATCGAACTGCTCTCATCCTTGATATATTTAATCAACGAGCAGCAACACACGAAGCGTCTTTACAGGTTTCATTAGCACAAATGGAATACCAACTACCTCGTCTAACAAAAATGTGGACTCATCTTGAGCGTCAAGCAGGAGGAAAGGTGAAGGGAATGGGTGAAAAACAAATAGAAGTAGACAAACGTATTCTGCGCAACCAAATTGGTATTCTTAAAAAAGAGCTAGAATCTGTTAGGAAACATCGAAAGCAGTACCGTAACAGGCGTTTCTCAGTACCTGTGCCAGTGGTATCCTTGGTTGGTTACACAAATGCTGGTAAGAGTACACTTCTGAATCAACTAACTGGAGCAGATGTTCTTGCCGAGGATAAATTATTTGCAACTTTAGATCCAACTACGAGGAGGGTACAGATGAAGAATGGAAAGGAGTTTCTCCTAACAGACACTGTTGGTTTTATTCAGAAGTTACCTACTACACTAGTTGCTGCCTTCAGAGCTACACTGGAGGAGATATCGGAGTCATCGCTCTTGGTGCATGTGGTTGATATAAGTCACCCCCTGGCTGAGCAACAGATAAATGCTGTGGACAAAGTCCTGTCAGAACTAGATGTATCATCAATTCCAAAATTGATGGTCTGGAACAAGGTTGACAAAGTTAGTGATCCCCAGAAACTCAGGCTAGAAGCTGACAAAAGAGATGATGTTGTATGCATATCTGCTTTAAGTGGTGATGGCTTACAAGAATTTTGTGATGCAGTTCAAGACAAGCTAAAGGACTCCATGGTTTGGGTGGAAGCTTTGGTCCCATTTGAAAATGGGGACCTTCTCAGCACCATACACCAGGTTGGAATGGTTGAGAAAACTGAATATACAGAGCAAGGGACATATATCAAGGCACATGTGCCCCTGCGTTTTGCAAGAATGCTTACACCCATGAGGCAACTGTGCGTATCGCGACCTTAA 1608 0.4496 MSGAFLYGSVIHPLIQQRYHYLSPPIPIRPLCISPLTTSVLQRDSAVELASSSIDSNDAVSPQNGTVQQHNEEAAPVPSLPAEENKATTRFRKKKEDDVVSDNRFKLRNGRQVFEEKAYLVGVERKNDVQDFGIEESLSELAQLADTAGLLVVGSTYQKLTSPNPRTYIGSGKVSEIKSAIHALGVETVIFDDELSAGQLRNLEKIFGGDVRVCDRTALILDIFNQRAATHEASLQVSLAQMEYQLPRLTKMWTHLERQAGGKVKGMGEKQIEVDKRILRNQIGILKKELESVRKHRKQYRNRRFSVPVPVVSLVGYTNAGKSTLLNQLTGADVLAEDKLFATLDPTTRRVQMKNGKEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQINAVDKVLSELDVSSIPKLMVWNKVDKVSDPQKLRLEADKRDDVVCISALSGDGLQEFCDAVQDKLKDSMVWVEALVPFENGDLLSTIHQVGMVEKTEYTEQGTYIKAHVPLRFARMLTPMRQLCVSRP 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00106 535 PRINTS GTP1/OBG GTP-binding protein family signature 312 332 IPR006073 GO:0005525
Pumo9g00106 535 PRINTS GTP1/OBG GTP-binding protein family signature 379 397 IPR006073 GO:0005525
Pumo9g00106 535 NCBIfam small GTP-binding protein domain 311 467 IPR005225 GO:0005525
Pumo9g00106 535 CDD HflX 269 472 IPR030394 GO:0005525
Pumo9g00106 535 MobiDBLite consensus disorder prediction 52 95 - -
Pumo9g00106 535 Pfam GTP-binding GTPase N-terminal 135 224 IPR025121 -
Pumo9g00106 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 310 482 IPR027417 -
Pumo9g00106 535 Pfam GTP-binding GTPase Middle Region 227 304 IPR032305 -
Pumo9g00106 535 Coils Coil 283 303 - -
Pumo9g00106 535 NCBIfam GTPase HflX 117 471 IPR016496 GO:0005525
Pumo9g00106 535 PANTHER GTP-BINDING PROTEIN HFLX 65 519 IPR016496 GO:0005525
Pumo9g00106 535 Hamap GTPase HflX [hflX]. 138 501 IPR016496 GO:0005525
Pumo9g00106 535 Gene3D - 228 295 - -
Pumo9g00106 535 Gene3D - 309 477 IPR027417 -
Pumo9g00106 535 FunFam GTPase HflX 309 478 - -
Pumo9g00106 535 ProSiteProfiles HflX-type guanine nucleotide-binding (G) domain profile. 310 476 IPR030394 GO:0005525
Pumo9g00106 535 FunFam Predicted protein 129 251 - -
Pumo9g00106 535 Pfam HflX C-terminal domain 442 510 IPR045498 -
Pumo9g00106 535 MobiDBLite consensus disorder prediction 52 73 - -
Pumo9g00106 535 Pfam 50S ribosome-binding GTPase 312 430 IPR006073 GO:0005525
Pumo9g00106 535 Gene3D - 127 227 IPR042108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00106 Pumo-Chr9 1623609 1631217 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00106 9 1623609 1631217 Pumo9g00106 9 1623609 1631217 ECH