Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00105 ATGTATCCGAACCAAGCCTTTTCTTCAGGGTCCTATGCGGATGTGTTGTCTGGGAATCCTCTTTTACCTCATAACTACAGTGAAACTGTAGAAGGACAAAATGAGTTGAAGTTCATCACATCCATGAGGGACACAATGACTATGCAGCCTATTGATGGGCATTCCAATGCCGCCGCCACAGGTGATCCAGACTCTTTTGCTAATGCTGGAGATTCCCATGTTATTCCAAGGACAACACAATTGGGACTTGTGGAGAGTGAGCAAAATGTACAGAACCAAGGCTTGTCTCTTAGCCTTGGCTCAGTAATGCCTTCTATTGCATCTGTCCCTACCTTTCCATATCAGTATCCCGGCACAGGTTTCTCTTCACTAATGACTGCTTCTGTCCCAAATTTAAAGGGCACTTCATCTCTTAAAGATGATGAGGCCAGCTTACAAAGGGAATTAAGAAATGCTGAGTGCATGGCATCTTTAGCTTCTGGAGGATTTCACAAAAGGGAGGGTTTGTATAATCCACACCCTTCAATGTGCCTCAGTGAAGGCCAAAGTGATGGATCACAAGGTTTTTCCAACAGTGCCTTGAACTCACAATACCTCAAGGCAGCACAGGAGTTGCTTGATGAAATAGTTAATGTCCGAAAGGCTTTGAAGCAAACTGGTTTGGAAAAGCAACAGAGTTTCCGTGATATTGGTTTAGATGGCTCCAAAGATTCTGATGGAAAATCTACCAGCCAATCCGTGCAGATATCTTCAGGCCCCAATGGTTCTGCTGCTAACTCTTCATGTGAGCTATCACCTGCAGAACGACAGAATTTGTTGGACAAGAAGACAAAACTATTGTCTTTGTTGGATGAGGTAGATAAAAGATACCGGCAGTACTGCCACCAGATGCAGATTGTGGTGTCATCTTATGATATGGTTGCTGGTTGTGGAGCAGCTGAACCGTACACTGCACTTGCCTTGCGCACAATATCGCGCCACTTTCGGTGTTTGCGCGATGCCATTAGTGGCCAAATTCAAGCGACTCAAAGGAGCCTTGGAGAACAAGAGGGAATACCTCGTCTCCGCTATGTTGATCAGCAGCTTCGACAACAAAAGGCCCTTCAGCAACTTGGTGTAATGCGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAACCTCTGTTTCAATACTCCGTGCATGGCTCTTTGAGCATTTCCTTCATCCTTATCCAAAGGATTCAGAGAAAATTATGCTGGCAAGGCAAACTGGCTTAACAAGAAACCAGGTGGCAAATTGGTTCATTAATGCAAGGGTGCGTCTTTGGAAGCCAATGGTTGAAGAAATGTACAAAGAAGAATTTGGTGATTCTGAGATGAGCAGCAATCTATTACCATCAGAGAACACACTCAAAGCTCCAAGAGATGATGTTCAAGCTTCTGACAATAAAAGGGAAGAGTCCCAGGACAACTTAATAACAGTTGATGATAGTGTTCAGCATCATGGGTTGAAGTTGAATCATGCCTCAGAGTTGGACAGAGGGATCCAAAGCAGTGATCATAGAGAAAATGTCATGGATCCTAGAATTGGGAAATTGCAAGGTGACCAAAGGTTCAACATGAACAACAACAATAGCCCTTATTATGGTGATGGCTGCATAATGGCTTCTACTCCTACCACATATGATTTATCAGAGTTAGGTAACATTGCTGTGGGTGGACACGTGTCTCTTGCATTGGAATTAAGGAACTGTGAAAGTGAAGGATTTGGTGTGTCCAATGATGATGACATGCATAAAAGACGTAAGAAAACATTGGCTTCTTCCCCAGAGGCTGATTTGCTAGATTACCATTACACAGACCCAGGAAAGCAACAAAACAAGTTTGGCAATCCTCACCTATTACACGAGTTTGTTGTGTGA 1902 0.4395 MYPNQAFSSGSYADVLSGNPLLPHNYSETVEGQNELKFITSMRDTMTMQPIDGHSNAAATGDPDSFANAGDSHVIPRTTQLGLVESEQNVQNQGLSLSLGSVMPSIASVPTFPYQYPGTGFSSLMTASVPNLKGTSSLKDDEASLQRELRNAECMASLASGGFHKREGLYNPHPSMCLSEGQSDGSQGFSNSALNSQYLKAAQELLDEIVNVRKALKQTGLEKQQSFRDIGLDGSKDSDGKSTSQSVQISSGPNGSAANSSCELSPAERQNLLDKKTKLLSLLDEVDKRYRQYCHQMQIVVSSYDMVAGCGAAEPYTALALRTISRHFRCLRDAISGQIQATQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPETSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSEMSSNLLPSENTLKAPRDDVQASDNKREESQDNLITVDDSVQHHGLKLNHASELDRGIQSSDHRENVMDPRIGKLQGDQRFNMNNNNSPYYGDGCIMASTPTTYDLSELGNIAVGGHVSLALELRNCESEGFGVSNDDDMHKRRKKTLASSPEADLLDYHYTDPGKQQNKFGNPHLLHEFVV 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00105 633 CDD homeodomain 378 439 IPR001356 GO:0003677
Pumo9g00105 633 ProSiteProfiles 'Homeobox' domain profile. 375 438 IPR001356 GO:0003677
Pumo9g00105 633 MobiDBLite consensus disorder prediction 468 485 - -
Pumo9g00105 633 SUPERFAMILY Homeodomain-like 379 445 IPR009057 -
Pumo9g00105 633 SMART prehox3 187 337 IPR006563 -
Pumo9g00105 633 MobiDBLite consensus disorder prediction 237 263 - -
Pumo9g00105 633 Coils Coil 199 219 - -
Pumo9g00105 633 Pfam Associated with HOX 194 336 IPR006563 -
Pumo9g00105 633 SMART HOX_1 378 442 IPR001356 GO:0003677
Pumo9g00105 633 FunFam BEL1-like homeodomain protein 4 381 443 - -
Pumo9g00105 633 MobiDBLite consensus disorder prediction 448 485 - -
Pumo9g00105 633 Gene3D - 375 452 - -
Pumo9g00105 633 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 130 472 - -
Pumo9g00105 633 Pfam Homeobox KN domain 395 434 IPR008422 GO:0003677|GO:0006355
Pumo9g00105 633 MobiDBLite consensus disorder prediction 227 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00105 Pumo-Chr9 1612257 1616341 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pumo9g00105 POX 2.4e-49 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00105 9 1612257 1616341 Pumo9g00105 9 1612257 1616341 ECH