Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo9g00085 | ATGGCGGTAGATAATCCCGAGGATGGATTGAAGAAGTTGGAATACTTGTCGCTGGTGTCGAAGGTTTGCACCGAGTTGGAGTCCCACACCGGCACCGGCGACAAGGTTCTTGCGGAGTTCATCACTGAGCTGGGTCGATCATCGGAGAATGTTGAGGAATTTGACGCGAAATTGAAGGAGAACGGTGCGGAGATGCCGGATTACTTTGTCAAAACGCTCCTCACCATTATTCACGCCATTCTCCCTCCCAAGCCGAAGGGTTCGAAGAAGGAGAAAGAGGGTGGCAACGGCGGCAAGACCAAGTTCAAGGCTCTGGCCATCACAGACGATAGGGACCGGGCCAAGGAGCTTCAGAAGGAGATAGAATCTGAGGCCAGAGAAAAGCAGAAGCCAGAAATTGAGGAAGATGATGGGTACAGAGATAGAGATAGAAGAGATAGGCGCAGGGACAGGTATGGAAGAGATAGAGATTATGAGGATGATAGAAGGGATTATGGTAGAAGAGGAAGAGATAGAGATGATGAGGATGATAGAAGGGATTACGGCAGAAGAGGAAGAGATAGAGATGATGAAGATGATAGAAGGGATTCCAGCAGAAGAGGAAGAGATAAATATGATAGGGATAGAGATAGAGATCGAGATAGATATGAGAGGCGCAGGAGAGATGAACATGAAGAGGATGGGCGTGGAAAGGAGAATGGGGATAGAGATGGTAATAGGAAGGGTTCACGGCATGGTTCTGGTGAACTTGAATTATACGCGGTTTATAAAGGGCGAGTATCGAGGGTGATGGAGACTGGGTGCTTTGTTCAGCTGGACGACTTCAGAGGGAAGGAGGGGTTGGTGCATGTGTCGCAGATGGCGACTCGGAGGATTACGAATGCCAAGGATGTTGTAAAACGTGACCAGGAGGTCTATGTAAAGGTGATCTCAGTTTCGGGTCAGAAGTTGTCTCTTTCCATGAGGGATGTTGATCAACATACAGGCAAGGACCTCCTTCCGTTGAAGAAGAGCTCCGAGGATGATGCATTGAGGATGAATCCGCAGGATTCGAAAGATGGGCCGGTTGCCAGGACGGGGCTTTCAGGTATCAGGATTGTGGAAGAAGATGATGTTGGTTCTTCACGGAGACCTCTGAAGAGAATGAGCTCTCCGGAGAGATGGGAAGCGAAACAGTTGATTGCTTCGGGTGTCATGAGTGTTTCAGAGTATCCAACTTATGATGAGGAGGGAGATGGATTGCTGTACCAAGAGGAAGGTGCTGAGGAGGAGCTTGAGATTGAGTTGAATGAGGATGAACCTGCGTTCTTGCAAGGGCAGAGCAGATACTCGATGGATATGTCTCCTGTTAAGATTTTTAAGAATCCAGAAGGTTCTCTGGGTCGAGCTGCTGCACTCCAGTCTGCACTTATAAAGGAACGTAGGGAAGTGCGAGAACAACAACAACGCACAATGCTTGATTCAATTCCAAAGGATCTCAATCGGCCTTGGGAAGACCCTATGCCAGAGTCAGGTGAAAGGCATCTTGCCCAGGAGCTTAGGGGTGTTGGCTTATCAGCGTATGATATGCCAGAATGGAAGAAGGATGCCTATGGGAAAACCATTACTTTTGGGCAAAGGTCAAAGCTTTCTATTCAAGAGCAGAGGCAGAGTTTGCCAATTTACAAGTTAAAAAAAGAATTGATTCAGGCTGTGCATGATAATCAAGTGTTGGTGGTTATTGGAGAAACTGGTTCTGGTAAGACCACTCAGGTCACACAGTATCTTGCTGAAGCAGGTTACACCACAAGAGGCAAAATTGGATGTACTCAACCCCGTAGGGTGGCTGCAATGTCAGTTGCAAAGAGAGTTGCAGAAGAGTTTGGTTGTCGATTGGGAGAGGAAGTTGGTTATGCCATTCGGTTTGAGGATTGCACTGGACCAGATACCGTTATCAAGTACATGACAGATGGTATGCTTCTTAGGGAAATATTGGTTGATGAGAATCTGTCACAGTATTCTGTTATAATGCTTGATGAAGCCCACGAAAGAACTATTCATACTGATGTTCTTTTTGGACTGCTGAAGCAGCTAGTGAAGCGTAGACCTGAATTGAGATTGATCGTCACATCTGCTACTCTGGATGCTGAGAAATTTTCAGGATATTTCTTTAACTGTAACATCTTTACTATTCCTGGTAGAACTTTTCCTGTGGAAATACTTTACACTAAACAACCTGAAAGTGATTATTTAGATGCAGCTTTAATCACTGTCTTACAGATCCATCTGACAGAGCCTGAGGGAGACATTCTTCTCTTTTTGACTGGTCAAGAAGAGATTGATTTTGCTTGCCAATCTCTCTATGAGAGAATGAAAGGATTAGGCAAGAATGTTCCAGAGCTTATCATTTTACCAGTTTATAGTGCCCTTCCTAGTGAAATGCAGTCTAGGATATTTGATCCTGCTCCTCCTGGGAAAAGGAAAGTGGTTGTGGCTACTAACATTGCTGAGGCTTCTTTGACTATCGATGGGATATTTTATGTCATTGATCCTGGATTTGCTAAGCAAAATGTTTATAACCCAAAGCAAGGACTTGATTCTTTGGTGATAACTCCAATTTCACAAGCATCAGCCAAACAAAGAGCTGGACGTGCAGGGCGTACTGGACCTGGGAAGTGTTATCGTCTCTATACTGAGAGTGCATATAGGAATGAGATGTCTCCCACTACAATTCCTGAGATTCAAAGGATAAATTTGGGGATGACTACTCTTAATATGAAAGCTATGGGGATAAATGATCTACTGTCATTTGATTTTATGGATCCACCATCACCCCAAGCATTGATTTCTGCCATGGAGCAGCTTTACAGTCTTGGAGCATTGGATGAAGAGGGCCTTTTAACCAAATTAGGGAGGAAAATGGCAGAATTTCCTTTGGATCCACCGTTGTCCAAGATGTTGCTTGCCAGCGTGGACCTTGGATGCAGTGATGAAATTTTGACCATAATTGCCATGATCCAGACCGGCAATATTTTTTACAGGCCAAGGGAAAAGCAAGCCCAAGCAGATCAGAAGAGGGCAAAGTTTTTTCAGCCAGAGGGTGACCATCTTACACTGCTTGCTGTTTATGAGGCTTGGAAAGCCAAGAATTTTTCTGGGCCCTGGTGTTTTGAGAACTTCGTTCAATCCCGATCACTGAGAAGAGCACAAGATGTCAGGAAACAACTTCTCACCATCATGGACAAGTACAAATTGGATGTTGTAAGTGCTGGAAAAAACTTCACCAAAGTCAGGAAGGCTATCACTGCAGGATTCTTTTTCCATGCTGCTAGGAAGGACCCCCAGGAAGGTTACAGAACCCTTGTGGAGAACCAGCCTGTGTATATCCATCCAAGTTCAGCTTTGTTCCAGAGACAGCCAGACTGGGTCATCTACCATGAGCTTGTGATGACAACAAAGGAATATATGCGTGAGGTCACTGTCATAGACCCCAAATGGCTTGTTGAATTGGCTCCAAGATTCTTCAAAGTGGCAGATCCTACAAAGATGAGCAAGCGAAAGCGTCAAGAGCGAATTGAACCACTTTATGATAGATACCACGAGCCAAACTCATGGCGTTTGAGCAAACGCCGTGCATGA | 3618 | 0.4527 | MAVDNPEDGLKKLEYLSLVSKVCTELESHTGTGDKVLAEFITELGRSSENVEEFDAKLKENGAEMPDYFVKTLLTIIHAILPPKPKGSKKEKEGGNGGKTKFKALAITDDRDRAKELQKEIESEAREKQKPEIEEDDGYRDRDRRDRRRDRYGRDRDYEDDRRDYGRRGRDRDDEDDRRDYGRRGRDRDDEDDRRDSSRRGRDKYDRDRDRDRDRYERRRRDEHEEDGRGKENGDRDGNRKGSRHGSGELELYAVYKGRVSRVMETGCFVQLDDFRGKEGLVHVSQMATRRITNAKDVVKRDQEVYVKVISVSGQKLSLSMRDVDQHTGKDLLPLKKSSEDDALRMNPQDSKDGPVARTGLSGIRIVEEDDVGSSRRPLKRMSSPERWEAKQLIASGVMSVSEYPTYDEEGDGLLYQEEGAEEELEIELNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLGRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPESGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDENLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPELRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTTIPEIQRINLGMTTLNMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAGKNFTKVRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA | 1205 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo9g00085 | 1205 | SMART | ha2_5 | 943 | 1033 | IPR007502 | GO:0004386 | |
| Pumo9g00085 | 1205 | Coils | Coil | 463 | 483 | - | - | |
| Pumo9g00085 | 1205 | MobiDBLite | consensus disorder prediction | 83 | 246 | - | - | |
| Pumo9g00085 | 1205 | ProSitePatterns | DEAH-box subfamily ATP-dependent helicases signature. | 667 | 676 | IPR002464 | - | |
| Pumo9g00085 | 1205 | ProSiteProfiles | S1 domain profile. | 253 | 322 | IPR003029 | GO:0003676 | |
| Pumo9g00085 | 1205 | SMART | S1_6 | 251 | 322 | IPR022967 | - | |
| Pumo9g00085 | 1205 | CDD | DEXHc_DHX8 | 547 | 725 | IPR044762 | GO:0000398|GO:0003724|GO:0005524 | |
| Pumo9g00085 | 1205 | SMART | helicmild6 | 778 | 882 | IPR001650 | - | |
| Pumo9g00085 | 1205 | FunFam | Pre-mRNA-splicing factor ATP-dependent RNA helicase | 518 | 727 | - | - | |
| Pumo9g00085 | 1205 | Gene3D | - | 524 | 727 | IPR027417 | - | |
| Pumo9g00085 | 1205 | Pfam | Oligonucleotide/oligosaccharide-binding (OB)-fold | 1090 | 1165 | IPR011709 | - | |
| Pumo9g00085 | 1205 | FunFam | Pre-mRNA-splicing factor ATP-dependent RNA helicase | 927 | 1026 | - | - | |
| Pumo9g00085 | 1205 | Gene3D | - | 728 | 902 | IPR027417 | - | |
| Pumo9g00085 | 1205 | Pfam | Helicase conserved C-terminal domain | 750 | 882 | IPR001650 | - | |
| Pumo9g00085 | 1205 | Gene3D | - | 927 | 1026 | - | - | |
| Pumo9g00085 | 1205 | FunFam | Pre-mRNA-splicing factor ATP-dependent RNA helicase | 728 | 902 | - | - | |
| Pumo9g00085 | 1205 | CDD | S1_DHX8_helicase | 253 | 329 | - | - | |
| Pumo9g00085 | 1205 | FunFam | ATP-dependent RNA helicase DHX8 | 248 | 333 | - | - | |
| Pumo9g00085 | 1205 | SUPERFAMILY | Nucleic acid-binding proteins | 252 | 329 | IPR012340 | - | |
| Pumo9g00085 | 1205 | MobiDBLite | consensus disorder prediction | 330 | 348 | - | - | |
| Pumo9g00085 | 1205 | CDD | GH2-like_DHX8 | 13 | 80 | - | - | |
| Pumo9g00085 | 1205 | Coils | Coil | 107 | 134 | - | - | |
| Pumo9g00085 | 1205 | CDD | SF2_C_RHA | 729 | 890 | - | - | |
| Pumo9g00085 | 1205 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 542 | 1075 | IPR027417 | - | |
| Pumo9g00085 | 1205 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 562 | 725 | IPR014001 | - | |
| Pumo9g00085 | 1205 | Pfam | DEAD/DEAH box helicase | 558 | 708 | IPR011545 | GO:0003676|GO:0005524 | |
| Pumo9g00085 | 1205 | MobiDBLite | consensus disorder prediction | 84 | 246 | - | - | |
| Pumo9g00085 | 1205 | MobiDBLite | consensus disorder prediction | 330 | 364 | - | - | |
| Pumo9g00085 | 1205 | Pfam | S1 RNA binding domain | 254 | 320 | IPR003029 | GO:0003676 | |
| Pumo9g00085 | 1205 | SMART | ultradead3 | 550 | 734 | IPR014001 | - | |
| Pumo9g00085 | 1205 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 743 | 923 | IPR001650 | - | |
| Pumo9g00085 | 1205 | Gene3D | - | 248 | 333 | IPR012340 | - | |
| Pumo9g00085 | 1205 | PANTHER | ATP-DEPENDENT RNA HELICASE | 483 | 1167 | - | - | |
| Pumo9g00085 | 1205 | Pfam | Helicase associated domain (HA2) | 944 | 1032 | IPR007502 | GO:0004386 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo9g00085 | Pumo-Chr9 | 1268982 | 1275847 | Dispersed/Transposed |