Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00083 ATGATGGCTTCCGTAGAAGAAAAGATTAAAACTGGAGGAGTTGGAGGAGGAATGGTTGTTGGGGGTCAAACTCTTGTTGCTGAGATGAAACTGTTGAAAGAAATGCAGGAACATTCTGGGGTCAGAAAGACTTTGAATTCAGAGTTATGGCATGCTTGTGCAGGCCCTCTTGTGTCATTACCTCAGGTTGGGAGTCTTGTGTTTTACTTCCCTCAGGGACATAGTGAGCAGGTGGCAGCTTCTACTAGAAGAACAGCAACCTCGCAGATTCCAAACTACCCCAACCTTCCATCTCAGTTGCTTTGCCAAGTTCAAAATGTCACACTTCATGCAGACAAGGAGACAGATGAAATCTATGCTCAAATGACTCTGCAACCCCTGAACTCTGAAAAAGAAGTCTTTCCCATATCTGATTTTGGGCTAAAGCACAGTAAACATCCCAGTGAGTTCTTCTGCAAAACTTTGACTGCTAGTGACACAAGCACGCATGGTGGATTTTCGGTCCCACGCAGGGCAGCAGAGAAGCTATTTCCTCCATTGGATTACACAATTCAACCCCCAACTCAAGAACTTGTTGTTCGAGATTTGCATGATAATACCTGGACATTTAGACATATATACCGGGGTCAACCAAAGAGACACCTTCTCACAACAGGATGGAGTTTGTTTGTAGGCTCAAAAAGGCTTAGAGCTGGTGATTCTGTTCTTTTCATCAGGGATGAGAAATCACAATTGCGAGTTGGCGTGAGGCGTGTTAATCGTCAACAGACAACACTGCCATCATCAGTACTTTCTGCTGATAGCATGCACATTGGTGTGCTTGCTGCTGCAGCTCATGCTGCTGCTAATCGAAGTCCTTTCACTATTTTCTACAATCCAAGGGCATGCCCTTCAGAATTTGTTATACCTCTGGCCAAATACAGAAAAGCTGTATTTGGGACTCAGGTCTCAGTTGGCATGAGATTTGGCATGATGTTTGAGACAGAGGAATCGGGTAAGCGCAGATATATGGGTACAATAGTTGGTATCAGTGATGTGGATCCTTTAAGGTGGCCTGGTTCTAAATGGCGAAATATTCAGGTGGAGTGGGATGAGCCAGGGTGTGGTGATAAGCAGAATAGAGTTAGTGTGTGGGAGATTGAGACTCCTGAAAGCCTTTTTATCTTTCCTTCTTTGACTTCAGGTCTAAAACGGCCATTACCATCTGGACTTTTGGAAAATGAGTGGGGAACTTTGTTAAGAAGACCTTTTATTAGAGTTCCAGAAAATGGAACCATGGAGCTCTCAAACTCAATGCCAAATCTCTACTCAGAACACCTGATGAAAATGCTTTATAAACCCCAGCTAATTAACAATAATGGAGCATTTTTATCCGCCATGCAACAAGAATCTGCTGCTACAAGAGGTCCCTTGCAAGAGATGAAGACCACACTGGCAGCAGAAAACCAAATGCCACTTAAAAATCTACATTCTCAATCTATCCCTGACCAACCTAATGCATTAAACATGCAATCACTGTTGAAAAATGATCAACCTGAAAAATTGCACCCTCTTGCCAAAATTGATAACCATCTGCCTTCTGGGATAGTTATTGACAAGCCAAAATTAGAATCTGAGGTATTATCTGTTCATGTGATTGACTACCCTTCCATTGAAGGGTGCAACATCGAAAAGGTGGCAGCAAATCCTGTTAACCAGCAAGGCCTACCAAACCAGTTGACATTCCATAATCAAAACCAGAGTCCACTACTCCCTCAATCTAGTCAATGGCCTATGCAACCTCAGCTAGAATCATCAATATTCCATCCTCAAATGATTGATATGACTCAAGCTGATTCAGCTATTGTAAATGGCCTACTTCCTCAGCTAGACATCGATGAATGGATGGCGTATGCTTCTTCCCAACCTTTTGCTGGGCAGAACAGACCAACTGGAACTTTGTCAGATTTGCAAGAACATACCTCACTTCAGCCTCAGGTAGTGAATCCCCCTTTACCTTCCTCAATGAACCATGAAGTGTGGGATCATTATGTCAAGAATTTGAAGTTGTTATCTCAAGGAGACCAGCTAACATCCATCTCTCAGCCAGGTCTGTATGGCCTCAATGGCATACCAAGTACAAACAATTTGAGGGATCTTTCAGCTGAGAGCAACAACCAAAGTGAGATTTGTGTCAATGTTGATGTTAGCAACAGTGTAGGCACCACCATGGTTGATCCTTCTACTTCAAGCACCATTTTGGATGAGTTTTGCACAATGAAGGACAGAGAATTTCAAAATCCTCAAGATTGCATGGTGGGCAACTTGAGTTCAAGCCAGGATGTCCAGTCTCAGATAACCTCGGCGAGTCTAGCCGAGTCACATGCCTTTCCTCTGAGAGACATCCCTGACAACTCAGGTGGCACTTCTTCAAGCCATGTTGATTTTGATGAAAGCAGCTTCCTGCAGAATAACTCATGGCAGCAAGTACCTGCGCCCATCCGAACCTACACCAAGGTGCAAAAGGCAGGTTCCGTAGGAAGATCAATTGATGTGACTACTTTCAAGAACTATGAGGAGTTGATCCGTGCAATCGAATGCATGTTTGGACTCGATGGTCTGCTGAATGACACTAAAGGTTCAGGATGGAAATTGGTGTATGTAGATTATGAGAATGATGTTCTACTTGTTGGGGATGATCCTTGGGAGGAATTTGTGGGCTGTGTCCGCTGCATCAGAATTTTATCACCTTCAGAAGTTCAGCAGATGAGTGAAGAGGGGATGAAGATTCTAAACAGTGGAGCTTTGCAAGGGATGAATGTTTGA 2805 0.436 MMASVEEKIKTGGVGGGMVVGGQTLVAEMKLLKEMQEHSGVRKTLNSELWHACAGPLVSLPQVGSLVFYFPQGHSEQVAASTRRTATSQIPNYPNLPSQLLCQVQNVTLHADKETDEIYAQMTLQPLNSEKEVFPISDFGLKHSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLRVGVRRVNRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKAVFGTQVSVGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQVEWDEPGCGDKQNRVSVWEIETPESLFIFPSLTSGLKRPLPSGLLENEWGTLLRRPFIRVPENGTMELSNSMPNLYSEHLMKMLYKPQLINNNGAFLSAMQQESAATRGPLQEMKTTLAAENQMPLKNLHSQSIPDQPNALNMQSLLKNDQPEKLHPLAKIDNHLPSGIVIDKPKLESEVLSVHVIDYPSIEGCNIEKVAANPVNQQGLPNQLTFHNQNQSPLLPQSSQWPMQPQLESSIFHPQMIDMTQADSAIVNGLLPQLDIDEWMAYASSQPFAGQNRPTGTLSDLQEHTSLQPQVVNPPLPSSMNHEVWDHYVKNLKLLSQGDQLTSISQPGLYGLNGIPSTNNLRDLSAESNNQSEICVNVDVSNSVGTTMVDPSTSSTILDEFCTMKDREFQNPQDCMVGNLSSSQDVQSQITSASLAESHAFPLRDIPDNSGGTSSSHVDFDESSFLQNNSWQQVPAPIRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKGSGWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKILNSGALQGMNV 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00083 934 Pfam AUX/IAA family 825 915 IPR033389 -
Pumo9g00083 934 SUPERFAMILY DNA-binding pseudobarrel domain 139 280 IPR015300 -
Pumo9g00083 934 FunFam Auxin response factor 824 917 - -
Pumo9g00083 934 Pfam Auxin response factor 277 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pumo9g00083 934 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 42 918 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pumo9g00083 934 SMART B3_2 151 253 IPR003340 GO:0003677
Pumo9g00083 934 FunFam Auxin response factor 315 387 - -
Pumo9g00083 934 FunFam Auxin response factor 149 253 - -
Pumo9g00083 934 ProSiteProfiles PB1 domain profile. 828 912 IPR000270 GO:0005515
Pumo9g00083 934 Gene3D - 315 387 - -
Pumo9g00083 934 Gene3D - 149 252 IPR015300 -
Pumo9g00083 934 SUPERFAMILY CAD & PB1 domains 830 907 - -
Pumo9g00083 934 CDD B3_DNA 150 251 IPR003340 GO:0003677
Pumo9g00083 934 Gene3D - 825 917 - -
Pumo9g00083 934 ProSiteProfiles B3 DNA-binding domain profile. 151 253 IPR003340 GO:0003677
Pumo9g00083 934 Pfam B3 DNA binding domain 151 252 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00083 Pumo-Chr9 1256320 1261913 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pumo9g00083 AUX_IAA 7.4e-11 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00083 9 1256320 1261913 Pumo9g00083 9 1256320 1261913 ECH