Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00080 ATGGGAGTTCCAGCGTTCTATCGATGGCTGGCGGAGAAGTATCCAATGGTGATTGTGGACGCAATCGAAGAGGAACCGGTCGTAATCGACGGCGTTCAAATCCCGGTGGATACGAGCAAGAAGAACCCTAACAACATCGAATACGATAACCTCTATCTCGACATGAACGGCATCATTCATCCTTGCTTTCATCCCGAGGATAGGCCGTCACCGACTTCGTTCGATGAGGTGTTTGAGTGCATGTTCGACTACATTGATAGGCTATTCGTTATGGTGCGGCCGCGGAAGCTGCTCTATATGGCTATTGACGGTGTTGCGCCGAGGGCGAAAATGAACCAGCAACGGTCTAGGCGGTTTAGGGCTGCGAAAGACGCAGCTGATGCGGCTGCTGAAGAAGCAAGGTTAAGGGAGGAATTTGAGAAGGAGGGAAGAAAGCTTCCTCCTAAAGAAGAGTCACAGACTTTTGATTCAAATGTCATTACACCTGGAACTGATTTTATGGCTGTTTTATCAATTGCACTTCAGTACTATGTTCATCTTAGGTTGAACAACGACCCTGGATGGCAAAATATTAAGGTTATTCTTTCTGATGCAAATGTTCCTGGTGAAGGGGAGCATAAGATTATGTCCTATATCCGCCTGCAGAGAAATCTTAAAGGTTATGATCCAAATACACGACATTGCCTATATGGTTTGGATGCCGATTTGATTATGTTGGCATTGGCTACCCATGAAGTTCATTTTTCAATTCTTAGAGAGGTTGTATTTACTCCTGGACAAGACAAATGCTTCCTCTGTGGTCAGATGGGTCATATGGCTGCAAACTGTGAAGGAAAGGCAAAAAGGAAGGCAGGAGAGTTTGATGAAAAAGGAGAGGCTATTGTGGCAAAAAAACCCTACCAGTTCCTGAATATTTGGACTCTAAGAGAATATCTGGAGTATGAGATGAGAATACCTAATCCTCCTTTTGAGATTGATTTTGAATGCATTGTGGATGATTTTATCTTCATGTGTTTTTTTGTCGGCAATGATTTCCTACCACATATGCCTACACTAGAGATTCGTGAGGGTGCAATTAACTTGCTGATAGCAGTATACAAGAAGGAATTTAGGGAATTCAGTGGTTATTTAACCAATGGAAGCACGATAAATTTGAGCAGGGTGGAGCACTTCATTCAGGCTGTTGGATCCTATGAAGATAAAATATTTCAGAAAAGAGCTCGATTGCATCAGCGACAAACAGAAAGAATAAAGCGCGAAAAGGCACAGGCAAGAAGGGGAGATGATGCTGAGCCTCAATTTCAACCACAGTCTTTAGTTGCAGTTTCACGATTCCATGGTTCTCGTCTTGCTTCAGCTGCAACGCCTTCACCATTTCAACAATCTGGGCATTTTAATTCTGAAGTGTCCTCATCAGTTAGAAAAGGCAATAAAGAAGCCTTTGAGAGGCCTCATAAAGTTGCTAGGTTTTCTTCAGGAGCAACTGTTGCTGCTGCTATTGTTGAAGCTGAGAATAATCTTGAAATAGATGCTCAAGATAATAAAGATGAATTGAAAACAAAATTGAAGGAGATACTTCGTGAGAAATCCGATGTATTCAACTCAAAAACTGCTGAAAAGGATAAGATTAAGTTGGGAGAACCAGGTTGGAAAGAGAGGTATTATGAGGAAAAATTTTCTGCCAAAACTCCTGAGGAACTTGAAGCGATACGGAAAGATGTTGTCTTGAAATACACTGAAGGCCTATGTTGGGTGATGCACTATTATTATGAAGGTGTTTGTTCTTGGAATTGGTTTTATCCTTATCACTATGCCCCCTTTGCGTCTGATCTCAAGGGCCTTGGTGAACTTGATATTAGCTTTAAGCTGGGTACCCCATTCAAACCATTTGACCAGCTTCTAGGGGTCTTTCCTGCTGCAAGCTCTCATGCACTTCCTGAGCCGTATAGGAGACTTATGACTGATCCAAACTCACCAATCATTGATTTTTATCCAATTGACTTTGAAGTGGACATGAATGGTAAACGCTATGCTTGGCAGGGTATTGCTAAGTTGCCATTTATTGATGAAGTGCGTCTTCTTGCAGAAGTTCAAAAGATTGAAAACTTGTTAACACCAGAGGAAAAGCGACGGAATGCTATAATGTTCGACTTGCTCTTTGTGAATTCTTGTCATCCTCTATCTGCGTGCATAAGTACACTTGACAACAAGTGTAAAACCATGTCAAACAGTGAACGGGCTGTGGTCAAGGAAAAAATCAATCCTGAAGAAAGTGGTGGAATGAATGGTTACATATCCTTATGTGGTGGAGAACCTTGCCCTCCTATCTTTAGGTCTCCTGTTGCAAGCATGGAAGATATCATGGACAATCATGTTATATGTGCAATATATAGACTCCCAGATGCACATAAACACATTGCCCGACCACCACAAGGAGTTAAATTTCCAAAAAAGATTGTTGGAATTGGGGATCTAAAACCTGAACCTGTTTTGTGGCATGAAGATTTTGGTAGGAGACACCATGCTGAAAATGGGAGGAAAAACCCTCCTGGATCTATTTCTGGTCGGGAGCTTGGAGATGCAGCACACAGACTCATCGTCAATTCCTTACAGGCAAAGGTTGACACTAATGGAGGATACCACCATCCGCATAATGGACCTCCTATATCTTATCCTGCACCACCAATGGGTCATCATCGACAACCAGTGCCTTCCTATGGTTACGAATCACGCCCAGGATACGTTGCAATGCCGCCTCCTATTTCAGCTCCCTCACTCCAAGGCAGACCACATTTTCCACCTTACAATGCTGTCCCTACTGCTCAGCAGTATGGTTACAATCAACCATACCCCCCGCCGGCGGCGGTGGCAGTACAATCATCCTCGTCAGCAATCAAATTCTTACGAAAGAAATGA 2916 0.4297 MGVPAFYRWLAEKYPMVIVDAIEEEPVVIDGVQIPVDTSKKNPNNIEYDNLYLDMNGIIHPCFHPEDRPSPTSFDEVFECMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEARLREEFEKEGRKLPPKEESQTFDSNVITPGTDFMAVLSIALQYYVHLRLNNDPGWQNIKVILSDANVPGEGEHKIMSYIRLQRNLKGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQDKCFLCGQMGHMAANCEGKAKRKAGEFDEKGEAIVAKKPYQFLNIWTLREYLEYEMRIPNPPFEIDFECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLIAVYKKEFREFSGYLTNGSTINLSRVEHFIQAVGSYEDKIFQKRARLHQRQTERIKREKAQARRGDDAEPQFQPQSLVAVSRFHGSRLASAATPSPFQQSGHFNSEVSSSVRKGNKEAFERPHKVARFSSGATVAAAIVEAENNLEIDAQDNKDELKTKLKEILREKSDVFNSKTAEKDKIKLGEPGWKERYYEEKFSAKTPEELEAIRKDVVLKYTEGLCWVMHYYYEGVCSWNWFYPYHYAPFASDLKGLGELDISFKLGTPFKPFDQLLGVFPAASSHALPEPYRRLMTDPNSPIIDFYPIDFEVDMNGKRYAWQGIAKLPFIDEVRLLAEVQKIENLLTPEEKRRNAIMFDLLFVNSCHPLSACISTLDNKCKTMSNSERAVVKEKINPEESGGMNGYISLCGGEPCPPIFRSPVASMEDIMDNHVICAIYRLPDAHKHIARPPQGVKFPKKIVGIGDLKPEPVLWHEDFGRRHHAENGRKNPPGSISGRELGDAAHRLIVNSLQAKVDTNGGYHHPHNGPPISYPAPPMGHHRQPVPSYGYESRPGYVAMPPPISAPSLQGRPHFPPYNAVPTAQQYGYNQPYPPPAAVAVQSSSSAIKFLRKK 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00080 971 MobiDBLite consensus disorder prediction 413 428 - -
Pumo9g00080 971 MobiDBLite consensus disorder prediction 138 157 - -
Pumo9g00080 971 PIRSF Exonuclease_Xrn2 1 913 IPR017151 GO:0004534|GO:0005634|GO:0006139
Pumo9g00080 971 Gene3D - 147 391 - -
Pumo9g00080 971 Gene3D - 1 135 - -
Pumo9g00080 971 FunFam 5'-3' exoribonuclease 149 372 - -
Pumo9g00080 971 MobiDBLite consensus disorder prediction 413 433 - -
Pumo9g00080 971 Gene3D - 617 714 - -
Pumo9g00080 971 CDD PIN_XRN1-2-like 51 312 - -
Pumo9g00080 971 PANTHER 5'->3' EXORIBONUCLEASE 1 922 IPR027073 -
Pumo9g00080 971 MobiDBLite consensus disorder prediction 452 471 - -
Pumo9g00080 971 Pfam Zinc knuckle 262 276 IPR001878 GO:0003676|GO:0008270
Pumo9g00080 971 SMART c2hcfinal6 262 278 IPR001878 GO:0003676|GO:0008270
Pumo9g00080 971 SUPERFAMILY Retrovirus zinc finger-like domains 258 283 IPR036875 GO:0003676|GO:0008270
Pumo9g00080 971 FunFam 5'-3' exoribonuclease 1 136 - -
Pumo9g00080 971 FunFam 5'-3' exoribonuclease 614 714 - -
Pumo9g00080 971 Pfam Xrn1 helical domain 325 824 IPR041412 -
Pumo9g00080 971 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
Pumo9g00080 971 Coils Coil 122 142 - -
Pumo9g00080 971 Coils Coil 508 528 - -
Pumo9g00080 971 ProSiteProfiles Zinc finger CCHC-type profile. 262 276 IPR001878 GO:0003676|GO:0008270
Pumo9g00080 971 MobiDBLite consensus disorder prediction 453 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00080 Pumo-Chr9 1162304 1173230 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00080 9 1162304 1173230 Pumo9g00080 9 1162304 1173230 ECH