Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01988 ATGCTCCATCCACACCACCAAACCAATACAGCACGCCACAGGAGGAGCCTCCTGTTTCTGTTTGTTTCCATTTCCTCTCACAAAATAGTATTGATGAACACTAGCAGAAAAGACATGGACCGGATCAAAGGCCCATGGAGCCCGGAGGAGGACGAGGCTCTGCAGAAGCTGGTGGAGAAGCACGGGCCCAGGAACTGGTCCCTCATCAGCAAGTCCATTCCGGGCCGGTCCGGCAAGTCCTGCAGGCTCCGGTGGTGCAATCAGCTGTCCCCCCAGGTGGAGCACCGGGCCTTCACTCCCGAAGAGGACGACACCATAATCCGGGCCCATGCCCGCTTCGGCAACAAGTGGGCCACCATAGCCCGCCTCCTCCACGGCAGAACCGACAACGCAATCAAGAACCACTGGAACTCCACCTTGAAGCGCAAGTGCGCTTCAACCATGCTCGACGACAACACTCCACCGCTGAAGAGGTCCGTGAGTGCCGGTGCTGCTATTCCAGTCTCCACTGGACTCTACATGAACCCTCCCACACCGGGTAGCCCCTCCGGATCCGATGTGAGCGAGTCCAGCGTACCAGTTGCATCATCCTCGCACGTGTACCGACCCGTGCCTAGGACTGGCGGGGTTCTACCACCCGTAGAAACGACGTCGTCCTCCAATGACCCTCCAACTTCGCTATCCCTATCCCTCCCCGGCGTGGACTCTTCCGAAGTCTCCAATCGGATAACTGAGCCAATCCATGCTGCCCCTCCGCCACAGCCGTCGAATACTATCCCTTTGCTGCCAATGATGGCGCCTCCGGTGGCGGTGAAACCGGCGGGGTTGGCGCCGTTTAATTTTAGCGCAGAGTTCCTCGCTGTGATGCAGGAAATGATAAGGAAGGAGGTGAGGAGTTATATGGAGCTGTACAATCAGAATGGGATGTGTTTTCAAGCCGCAGTGAATGATGGGTTTAGGAACGCTTCAGTGAAGCGTATTGGAATTAGCAGGGTTGATTCGTAA 1005 0.5672 MLHPHHQTNTARHRRSLLFLFVSISSHKIVLMNTSRKDMDRIKGPWSPEEDEALQKLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLHGRTDNAIKNHWNSTLKRKCASTMLDDNTPPLKRSVSAGAAIPVSTGLYMNPPTPGSPSGSDVSESSVPVASSSHVYRPVPRTGGVLPPVETTSSSNDPPTSLSLSLPGVDSSEVSNRITEPIHAAPPPQPSNTIPLLPMMAPPVAVKPAGLAPFNFSAEFLAVMQEMIRKEVRSYMELYNQNGMCFQAAVNDGFRNASVKRIGISRVDS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01988 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 93 IPR017930 -
Pumo8g01988 334 Gene3D - 96 160 - -
Pumo8g01988 334 ProSiteProfiles Myb-like domain profile. 38 89 IPR001005 -
Pumo8g01988 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 144 IPR017930 -
Pumo8g01988 334 MobiDBLite consensus disorder prediction 212 240 - -
Pumo8g01988 334 Pfam Myb-like DNA-binding domain 43 89 IPR001005 -
Pumo8g01988 334 Pfam Myb-like DNA-binding domain 97 139 IPR001005 -
Pumo8g01988 334 PANTHER MYB PROTEIN-RELATED 43 215 - -
Pumo8g01988 334 SUPERFAMILY Homeodomain-like 40 136 IPR009057 -
Pumo8g01988 334 CDD SANT 45 87 IPR001005 -
Pumo8g01988 334 ProSiteProfiles Myb-like domain profile. 90 140 IPR001005 -
Pumo8g01988 334 FunFam MYB transcription factor 43 94 - -
Pumo8g01988 334 Gene3D - 42 94 - -
Pumo8g01988 334 MobiDBLite consensus disorder prediction 170 240 - -
Pumo8g01988 334 FunFam Transcription factor MYB44 97 143 - -
Pumo8g01988 334 CDD SANT 97 140 IPR001005 -
Pumo8g01988 334 SMART sant 42 91 IPR001005 -
Pumo8g01988 334 SMART sant 94 142 IPR001005 -
Pumo8g01988 334 MobiDBLite consensus disorder prediction 174 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01988 Pumo-Chr8 56515210 56517426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01988 31 333 MYB Transcription Factor Family AT4G37260 51.786 2.49e-104 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo8g01988 Myb_DNA-binding 1.2e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01988 8 56515210 56517426 Pumo4g01920 4 25990746 25991606 ECH
Pumo9g00310 9 4932800 4934530 Pumo8g01988 8 56515210 56517426 ECH
Pumo8g01988 8 56515210 56517426 Pumo8g01988 8 56515210 56517426 ECH
Pumo4g01920 4 25990746 25991606 Pumo8g01988 8 56515210 56517426 PCT