Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01985 ATGCCTCAACCACATTCTCCTTCTTTTTCTTTCCTCCTCTGTCAAGAACAACAACCTTCACCTTTGACTTTTCCCGACAACCTCCACTTCTTCTCCCAACACGACCACCTTCTCTCTCTACTCTCCAAAGAGCGCGCCACGCACTCCACTCTCTCTCCTCGCCACGACGCCGTACGTTGGATTTCTAAAGTTTCCAACTTCCACGGCTTCACTCCTCTCACCACCGTTCTCGCCGTTAACTTCTTCGACAGGTTCGTCACCAGCCTAAGGTTTCGGAGCCAACAAAAACCATGGATGACTCAGCTGGCCGCACTTGCTTGCGTCTCTCTCGCGGCCAAAGTGGAGGAGACACGAGTGCCACTTCTTCTGGACTTCCAAGTGGAGGAATCGAAGTTCGTGTTTGAAGCAAAGACCATACAGAGAATGGAGCTCCTAGTGTTGTCCACTCTCGAATGGAAAATGAACCCTGTCACCCCAATTTCTTTCTTTCAACACCTTCTCACAAGGCTCGGTTTAAAGCGCCACTTGCATTGCCAATTTCTGTGTAGGTGCCAACGTGTTCTTCTCTCTCTCATTGCGGATTCAAGAGTTATGAGTTACCTTCCTTCTACATTGGCTGCTGCTATAATGATCCACGTTATTAAAGAGATTGAACCATTGATTGCAACTGAGTACCGAAATCAGCTTCTTGATTTGCTCAAAAGTAGTGAGGAACAAGTGAATGAGTGCTACAAACTGATGCTGAGACTGTTAGCTTGCTGTGAAGGCATTCACAATCTTGGTCAGAGGCGCAAACGTTTATCTGAACCAAGTAGCCTAGATGGGGTCATTGATGCATCTTTCAGTTGTGAAAGTTCAAATGATTCATGGACATTGGCATCATCACTTTCAGTGGAGCCAGTGTTTAAGAGGAGAAAAGCTCAGGACCAGCAGATGCGATTGCCTTCAGTGAATCGAGTGTCTATTGATGTTCGAAATGCTCCTCGTTAA 990 0.4677 MPQPHSPSFSFLLCQEQQPSPLTFPDNLHFFSQHDHLLSLLSKERATHSTLSPRHDAVRWISKVSNFHGFTPLTTVLAVNFFDRFVTSLRFRSQQKPWMTQLAALACVSLAAKVEETRVPLLLDFQVEESKFVFEAKTIQRMELLVLSTLEWKMNPVTPISFFQHLLTRLGLKRHLHCQFLCRCQRVLLSLIADSRVMSYLPSTLAAAIMIHVIKEIEPLIATEYRNQLLDLLKSSEEQVNECYKLMLRLLACCEGIHNLGQRRKRLSEPSSLDGVIDASFSCESSNDSWTLASSLSVEPVFKRRKAQDQQMRLPSVNRVSIDVRNAPR 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01985 329 Gene3D - 156 245 - -
Pumo8g01985 329 SUPERFAMILY Cyclin-like 34 155 IPR036915 -
Pumo8g01985 329 SUPERFAMILY Cyclin-like 139 252 IPR036915 -
Pumo8g01985 329 SMART Cyclin_C_2 157 285 IPR004367 -
Pumo8g01985 329 PANTHER CYCLINS 37 254 IPR039361 -
Pumo8g01985 329 Pfam Cyclin, N-terminal domain 46 155 IPR006671 -
Pumo8g01985 329 CDD CYCLIN_AtCycD-like_rpt1 54 152 - -
Pumo8g01985 329 Pfam Cyclin, C-terminal domain 157 252 IPR004367 -
Pumo8g01985 329 CDD CYCLIN_AtCycD-like_rpt2 157 247 - -
Pumo8g01985 329 Gene3D - 48 155 - -
Pumo8g01985 329 SMART cyclin_7 59 148 IPR013763 -
Pumo8g01985 329 SMART cyclin_7 165 249 IPR013763 -
Pumo8g01985 329 FunFam CYCLIN D32 156 245 - -
Pumo8g01985 329 FunFam D6-type cyclin 35 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01985 Pumo-Chr8 56474942 56476842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01985 30 326 Core Cell Cycle Gene Families AT5G67260 48.571 1.64e-94 285
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01985 8 56474942 56476842 Pumo4g01924 4 26084487 26086400 ECH
Pumo9g00302 9 4830824 4832921 Pumo8g01985 8 56474942 56476842 ECH
Pumo8g01985 8 56474942 56476842 Pumo8g01985 8 56474942 56476842 ECH
Pumo8g01985 8 56474942 56476842 Pumo3g00614 3 9258452 9260745 PCT
Pumo4g01924 4 26084487 26086400 Pumo8g01985 8 56474942 56476842 PCT