Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01327 ATGTCAGCCGATGACACACCACCTTCAAAGCCTGCCACAACCAAAGACCAAGAGACTCAAAGTCCCGGTGGCAGAAAAAGCTCCTCCACAAGGCCCCAAGAGCAAGGTCTCAAGTGTCCCCGATGCGACTCACCCAACACCAAATTCTGCTACTACAACAACTACAGCCTCACGCAGCCAAGACATTTCTGCAAGACATGTAGAAGATACTGGACCAAAGGTGGGGCTTTGCGCAACGTCCCTATTGGCGGTGGGTGCAGGAAGAACAAGAAGGTGAAGTCATCAAGGCTCTCATGTGACTCCAAAGACTCTGGCTCCTCCTCTTCAGAACTCGGTGGCCTCAAGTTCCTTCATTCTCTTTCTCCTTCCATGGACTTTCACCTTGGAGGGTTACCCTTCCCTAGGCTGCACCATCACCCTCCAACCACTTACAACCACTTTTCTTCTTTTGGAGACACTTCTAGTGCTTCTTCCTGTTTCAACCTTGACCCTTCTCCTGGCACCACCCCAAGTTCTTCTTTAGCTGCTCTCAATTACCCCTTTTCTTACAATGGTGCAATCCAAGGTATGAGCTCTATGAACGTTCATGGTGGCCTCGCTTCTTCCATAGAGTCCTTGAGTTCTATAAACCAGGACTTGCACTGGAAGCTGCAGCAGCAGCGATTGGCAATGCTGTTTGGTGGAGATAACAGCCAGAAAGATCATAGTGGTAGTGGAGTTTCACCAACGGTTAATAACCAGATTGAGAACCAGACACAGAAACCACAACCCATTTTGTTTCAGAACCTTGAGATTTCAAAGCCAGGGATTAGTTTCCCCGTTGGGAACTCCAGAAAAGAACATGGTCCAAGTGGGGACACAACACACACACCTTCTACCGAGTGGTTCTTTGGGAATTCTTATGCGTCAGGTGACTCCTACACCTACTACTACTACTACTACCAGTAG 948 0.4863 MSADDTPPSKPATTKDQETQSPGGRKSSSTRPQEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVKSSRLSCDSKDSGSSSSELGGLKFLHSLSPSMDFHLGGLPFPRLHHHPPTTYNHFSSFGDTSSASSCFNLDPSPGTTPSSSLAALNYPFSYNGAIQGMSSMNVHGGLASSIESLSSINQDLHWKLQQQRLAMLFGGDNSQKDHSGSGVSPTVNNQIENQTQKPQPILFQNLEISKPGISFPVGNSRKEHGPSGDTTHTPSTEWFFGNSYASGDSYTYYYYYYQ 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01327 315 MobiDBLite consensus disorder prediction 271 292 - -
Pumo8g01327 315 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
Pumo8g01327 315 MobiDBLite consensus disorder prediction 1 39 - -
Pumo8g01327 315 Pfam Dof domain, zinc finger 35 91 IPR003851 GO:0003677|GO:0006355
Pumo8g01327 315 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Pumo8g01327 315 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 22 222 IPR045174 GO:0003700|GO:0006355
Pumo8g01327 315 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01327 Pumo-Chr8 45371512 45373157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01327 27 300 C2C2-Dof Transcription Factor Family AT5G65590 43.416 1.50e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo8g01327 zf-Dof 1.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01327 - - gmx:100780729 520.39