Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01021 ATGTCTGAGGTTGTTATTAAAGACTCAGCCATAAAGCTGTTTGGTAGAACAATTTCTCTGCCACGCAACAACGAGGTTTCTGTTTCTGCTAATGATGAACCTGCTCCTCCTGAAGCTGAAGATTGTTCTCATCATCATCACTGTCCTCCTTCTTCATCTTTTCCACGTGAAGTGAGCTCCACAACGGAACATGAAGCTGAGAGGGATAAGGAACCATCAAGGAAAGAACTCACCTCAACACAAGAAGACGAGGCCCGAGAGGAACTAAAATCTCCAACATCTTCATGCAATCTCGAGAACCCCAAAACCCCTTCAACTGAAAGAGAAGTTTCCTTACTGAAATATTCCAAAAATGGAGACCAAAGCGACACAACAACAAGCGTGTCACAGGACAAAACAACACCAAAGAAACCAGACAAGGTGCTAGCATGCCCTCGATGCAACAGCATGGACACCAAGTTCTGCTACTACAACAACTACAACGTGAACCAGCCGCGCCATTTCTGCAAGCACTGCCAAAGATACTGGACTGCTGGAGGAACCATGAGGAACGTGCCGGTTGGTGCCGGTCGCCGCAAGAACAAGAACACTTCCTCTGTGTCGCATTATCGCCAGATCATGGTTCCTGAGGCCCTTCAGAACGGATCATTGCACGGTGCTGTGTTGACCTTTGGATCAGATTCTCCCCTCTGTGACTCCATGGCTTCTGTGTTGAGCCTTGCTGAGAAAACACAGAGTGGTGTCCTAAATGGTTTTCATTCACCTAAGCAAAATACTATTAATGGTAATAATGGGGATGAATATGATACTGTTGTGGCTTCAACTTTGAGTGAAAAGAGAGACAATGCTACTAGTTCACATGAAGAATCATTGGATAATAAGAGTTGTTATCGTCAAGGTTTCACTCCTCAATTGTGCTTCCCAGGTTCTTCTTCTTCTTCTTCTTCTTCTCCTTGGCCTTATCCATGGAACCCTGCAATGACTCCTTCAGCTTTTTGCCATCCTATGCCATTCTACCCCACACCAGCATTCTGGGGTTGCATGCCACCACCCTCTTGGAGTGTAAATTACCAATCTGCCCCTGGTTCTGGTCCAAATTCACCCACCTTAGGGAAACACTCAAGAGATGGGGATATCTTGTTTCAAAAGCCTGGTGGCATAGAAAGTAGCATCAACATGGTGGCAGAAAACAACAACAACACTGTGTTGATCCCCAAGACACTGAGAATTGATGACCCTACTGAAGCTGCAAAGAGCTCCATATGGTCAACACTAGGGATCAAGAATGAGAAGGGGAACTCTCTCAATGGAGGAGGGCTTTTCAAGGCATTTGCATCAAAGGGTAGTGATGACAAGAAGAACCATCATGTGATGGTTGAAGCATCCCCAGTGTTGCAAGCCAACCCTGCAGCTTTGTCAAGGTCCCTTGTCTTCCATGAGAGGACATAA 1449 0.4589 MSEVVIKDSAIKLFGRTISLPRNNEVSVSANDEPAPPEAEDCSHHHHCPPSSSFPREVSSTTEHEAERDKEPSRKELTSTQEDEAREELKSPTSSCNLENPKTPSTEREVSLLKYSKNGDQSDTTTSVSQDKTTPKKPDKVLACPRCNSMDTKFCYYNNYNVNQPRHFCKHCQRYWTAGGTMRNVPVGAGRRKNKNTSSVSHYRQIMVPEALQNGSLHGAVLTFGSDSPLCDSMASVLSLAEKTQSGVLNGFHSPKQNTINGNNGDEYDTVVASTLSEKRDNATSSHEESLDNKSCYRQGFTPQLCFPGSSSSSSSSPWPYPWNPAMTPSAFCHPMPFYPTPAFWGCMPPPSWSVNYQSAPGSGPNSPTLGKHSRDGDILFQKPGGIESSINMVAENNNNTVLIPKTLRIDDPTEAAKSSIWSTLGIKNEKGNSLNGGGLFKAFASKGSDDKKNHHVMVEASPVLQANPAALSRSLVFHERT 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01021 482 Pfam Dof domain, zinc finger 139 196 IPR003851 GO:0003677|GO:0006355
Pumo8g01021 482 MobiDBLite consensus disorder prediction 20 140 - -
Pumo8g01021 482 ProSiteProfiles Zinc finger Dof-type profile. 142 196 IPR003851 GO:0003677|GO:0006355
Pumo8g01021 482 MobiDBLite consensus disorder prediction 91 132 - -
Pumo8g01021 482 MobiDBLite consensus disorder prediction 37 51 - -
Pumo8g01021 482 PANTHER CYCLIC DOF FACTOR 2 5 482 IPR045174 GO:0003700|GO:0006355
Pumo8g01021 482 MobiDBLite consensus disorder prediction 60 90 - -
Pumo8g01021 482 ProSitePatterns Zinc finger Dof-type signature. 144 180 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01021 Pumo-Chr8 38382305 38386219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01021 7 481 C2C2-Dof Transcription Factor Family AT3G47500 40.600 9.33e-87 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo8g01021 zf-Dof 5.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01021 - - gmx:100775201 754.592