Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00733 ATGCAAGCTAAGCATTTGAACTACTTTGATCTGCAATTACGTTACGTGCTTGTGTCTCACATGCTCCCTATGCCTACGTACCTCAAGCTACCCTTACTCTCTCGAACCACACTCTCGAACACTTCTCACATTCTCGCCGCCGACCTCCGCCGCCTCTCCTCCTCCCGCTCCCCCCTCACCTCCGGCGCCGCCACGGGCTCCGGCCAGTACTTCGCCGACCTCCGCCTCGGCTCCCCGCCCCAGCGCCTCCTCCTCGTCGCCGACACCGGCAGCGACCTCGTCTGGGTCAAATGCTCCGCCTGCCGCAACTGCTCCTCCCACCGCTCCGGATCCGCATTCCTCCCTCGCCACTCCAGAACCTTCTCCTCCCACCACTGCTACGACTCGCCGTGTCAACTCGTCCCCCACCCGAGTCGTCACCAAAATGTCCGTTGCAACAAAAGCTCCAAACTCCACACCCCGTGCCGCTACCAATATTCCTACGCGGACGGGTCCACCACAACAGGGTTCTTCTCAAGGGAAACGACGACGCTCAACACAAGCTCCAAAGAAACAAAACTCAGAAACCTCGCCTTCGGCTGCGGGTTTAAAACCTCGGGCCCAAGCGTAACGGGCTCCAGCTTCAACGGCGCTCAGGGCGTAATGGGCCTGGGCCGCGGCCCGATCTCCTTCACCTCCCAACTCGGCCGCAAATTCGGAAACACCTTCTCCTACTGTCTCCTCGACTACACCTTCTCCCCTCCCCCCAAAAGCTACCTCACCATCGGCGCCTCCTCAAACGACGTCAGTGTCTCCGTTGACGGCGTTAGGTTACCGATAAGCGTCTCCGTTTGGGGGATCGACGGCAACGGTAACGGCGGCACCGTCGTGGACTCCGGCACCACGCTCACGTTTCTCGCGGAACCGGCCTACAGGCTCGTTCTGGCGGCGTTCCGGCGGCGCGTGAGGCTTCCCGCGGTGGACGGCGCCGCGCTCGGGTTCGACCTCTGCGTTAACGTCTCCGGCGTGGCGAGGCCGAGGCTGCCGCGGCTGAGGTTTCGCCTCGCCGGAAAATCGGTCCTGTCGCCGCCGGCTGGGAATTATTTCATCGAACCGGCGGAGCGAGTGAAGTGTCTCGCAATTCAACCGGCTCGACCGGGTTCAGGTTTTTCCGTGATCGGGAATCTGATGCAGCAAGGGTACTTGTTTGAGTTCGATTTGGACCGGTCGCGGATCGGGTTCACGCGTCACGGATGTGCGGTTCGCTGA 1248 0.6154 MQAKHLNYFDLQLRYVLVSHMLPMPTYLKLPLLSRTTLSNTSHILAADLRRLSSSRSPLTSGAATGSGQYFADLRLGSPPQRLLLVADTGSDLVWVKCSACRNCSSHRSGSAFLPRHSRTFSSHHCYDSPCQLVPHPSRHQNVRCNKSSKLHTPCRYQYSYADGSTTTGFFSRETTTLNTSSKETKLRNLAFGCGFKTSGPSVTGSSFNGAQGVMGLGRGPISFTSQLGRKFGNTFSYCLLDYTFSPPPKSYLTIGASSNDVSVSVDGVRLPISVSVWGIDGNGNGGTVVDSGTTLTFLAEPAYRLVLAAFRRRVRLPAVDGAALGFDLCVNVSGVARPRLPRLRFRLAGKSVLSPPAGNYFIEPAERVKCLAIQPARPGSGFSVIGNLMQQGYLFEFDLDRSRIGFTRHGCAVR 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00733 415 Gene3D Acid Proteases 260 414 IPR021109 -
Pumo8g00733 415 Gene3D Acid Proteases 47 256 IPR021109 -
Pumo8g00733 415 PRINTS Pepsin (A1) aspartic protease family signature 288 299 IPR001461 GO:0004190|GO:0006508
Pumo8g00733 415 PRINTS Pepsin (A1) aspartic protease family signature 384 399 IPR001461 GO:0004190|GO:0006508
Pumo8g00733 415 PRINTS Pepsin (A1) aspartic protease family signature 76 96 IPR001461 GO:0004190|GO:0006508
Pumo8g00733 415 FunFam Aspartyl protease family protein 2 51 256 - -
Pumo8g00733 415 Pfam Xylanase inhibitor C-terminal 263 408 IPR032799 -
Pumo8g00733 415 Pfam Xylanase inhibitor N-terminal 70 256 IPR032861 -
Pumo8g00733 415 CDD pepsin_A_like_plant 69 412 IPR034161 -
Pumo8g00733 415 PANTHER OS07G0603500 PROTEIN-RELATED 53 409 - -
Pumo8g00733 415 SUPERFAMILY Acid proteases 64 412 IPR021109 -
Pumo8g00733 415 ProSiteProfiles Peptidase family A1 domain profile. 70 408 IPR033121 -
Pumo8g00733 415 FunFam Aspartyl protease family protein 260 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00733 Pumo-Chr8 28342869 28346721 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00733 50 412 Miscellaneous Gene Families AT1G77480 26.185 1.15e-21 94.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g00733 8 28342869 28346721 Pumo8g00733 8 28342869 28346721 ECH