Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00729 ATGAAAAAGGAATTAGAAGATCAAGGCCAGTGTTCCTCTCAACCAATCAACAACACCAACACCAGCATCAACAACAGCATTCAAAGCTACCAAGAACAACTTCTCCTTCAACAACAGATGCAGCAACAAAACAGTGACCACAACATCTTTGGGGGTTCAAGAGGGTTAATGTTCCCTGAAGTCTCTCCAATCTTGCAACCATGGTCCATGCCTCCGGTTCACTCCTTCAACCACCCCGGTCCGGTTCACTACAACAACAACAACAACACGAACCCGGTTCATGACCAAGCATTTCTTGTCCCTCCTCCCACAACACCTTCACCCTATGCAAGCTTCTTCAGCAGCAGAAGGGTCCCTTCTCTTCAGTTTGCATACGAGGGTCCCTCTAATTCTGATCACCACCACCACCACCATCTGAGGATCATATCTGACACCCTTGGACCCATGGTTCAACCCGGTTCAGCAGCACCCTTTGGACTCCAAGCCGAGCTGGGAAAGATGACTGCTCAAGAAATCATGGAGGCTAAGGCTCTTGCTGCTTCCAAGAGTCACAGTGAAGCTGAAAGAAGACGCAGAGAGAGAATCAACAACCATCTTGCCAAGCTTCGCAGTTTGCTCCCTAACACTACCAAAACAGACAAAGCTTCACTATTGGCAGAAGTGATCCAGCACGTGAAGGAGCTGAAGCGCCAAACCTCCCTCATAGCAGAAACGAGTCCGGTGCCAACCGAGTCCGACGAGTTAACGGTGGACGCAGCCGACGAGGACGGAAAGTTCGTGATCAAGGCCTCGCTGTGCTGCGAAGATAGGTCAGATCTCTTGCCCGACCTAATCAAAACGCTGAAATCGTTGAGACTGAGGACCCTCAAGGCCGAAATCACATCGCTCGGTGGACGCGTGAAGAACGTGTTGGTCATAACCGGTGATAATGAAGATGATAATTCGAACACCAATAGTGGAGGAGAACAAAGCATGCAGCAACAACAACAGCAGCAGCAGCAATATTGTATTAGCTCAATACAAGAAGCACTTAAGGCAGTCATGGAGAAGAGTGGTGGGGATGAATCAGCTTCTGGGAATGTTAAGCGCCAAAGGACTAATAATATCAATATCCTTGAACAAAGGTCTTTATGA 1134 0.485 MKKELEDQGQCSSQPINNTNTSINNSIQSYQEQLLLQQQMQQQNSDHNIFGGSRGLMFPEVSPILQPWSMPPVHSFNHPGPVHYNNNNNTNPVHDQAFLVPPPTTPSPYASFFSSRRVPSLQFAYEGPSNSDHHHHHHLRIISDTLGPMVQPGSAAPFGLQAELGKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTESDELTVDAADEDGKFVIKASLCCEDRSDLLPDLIKTLKSLRLRTLKAEITSLGGRVKNVLVITGDNEDDNSNTNSGGEQSMQQQQQQQQQYCISSIQEALKAVMEKSGGDESASGNVKRQRTNNINILEQRSL 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00729 377 MobiDBLite consensus disorder prediction 357 377 - -
Pumo8g00729 377 Pfam Helix-loop-helix DNA-binding domain 182 228 IPR011598 GO:0046983
Pumo8g00729 377 SMART finulus 185 234 IPR011598 GO:0046983
Pumo8g00729 377 MobiDBLite consensus disorder prediction 308 332 - -
Pumo8g00729 377 CDD bHLH_AtAIG1_like 174 252 - -
Pumo8g00729 377 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 183 235 IPR036638 GO:0046983
Pumo8g00729 377 Gene3D - 174 235 IPR036638 GO:0046983
Pumo8g00729 377 FunFam transcription factor bHLH30 174 237 - -
Pumo8g00729 377 PANTHER TRANSCRIPTION FACTOR BHLH30 118 371 IPR045847 GO:0003700|GO:0006355
Pumo8g00729 377 MobiDBLite consensus disorder prediction 8 23 - -
Pumo8g00729 377 MobiDBLite consensus disorder prediction 349 377 - -
Pumo8g00729 377 MobiDBLite consensus disorder prediction 1 23 - -
Pumo8g00729 377 CDD ACT_UUR-ACR-like 264 310 - -
Pumo8g00729 377 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 179 228 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00729 Pumo-Chr8 28193820 28198346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00729 25 375 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 54.642 9.33e-114 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo8g00729 HLH 2.7e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g00729 8 28193820 28198346 Pumo8g00729 8 28193820 28198346 ECH