Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00706 ATGCAAGCTCACCCTTTCTCCTACATATCCTCTTGTCCTGGTAGTAGTAGTAGTAGTGCCTTCTTGGAACCTCATCATCATGAGGCTGTGGATGATGAGGCCTCCATCTCCCTCTCTCTTGGCCCTCCTGGCCAACAACAACAACAACAACACAACCCCAACAAAGCCACTTCCTCCTCCTCCTCCTCTCACCACCCTTCTTCAAGTACTCTGCACCATTACCAGCAAAACCCTACTACCTCTGATGGTCACCACCAGAGAGGTGTAACTGTGGCCCTTCACATTGGCCTTCCCAGTTCCACCACAACTAATTCACCAAACAGTGCCATTCAAACTAGCAATAAGGCTGATCTTCATTTGGCCTCTGCCCCCAATATTCAGGGCCAGTACTGGATCCCTTCTCCTGCTCAAATCCTCATTGGACCCACCCAGTTCTCTTGCACTGTCTGCAACAAAATGTTCAACCGTTTCAACAACATGCAGCAGATGCACATGTGGGGCCACGGTTCGCAATACCGGAAAGGCCCTGAATCACTGAGAGGAGCAAAGCCAGCCTCTTCAATGCTGAGGCTTCCCTGCTACTGCTGCGCGGAGGGTTGCAAGAACAACATAGACCATCCAAGGTCAAGGCCACTAAAAGATTTCAGGACCCTTCAGACACACTACAAGAGGAAGCATGGGGCAAAACCATTCGGGTGCAGAAAGTGTGGCAAGCCCTTTGCTGTGAGAGGGGATTGGAGGACGCACGAGAAGAACTGTGGGAAGCTTTGGTTCTGCATCTGTGGCTCTGATTTTAAGCACAAGAGGTCCCTCAAGGACCATGTTCGCGCCTTTGGGGATGGACACGCTCCGCACACTGTGGAGAGCTGTGATCAGATGGGGGAGGATGAGGATGATGAGGAGGAGTTGGAACTGGATGATGATGATGATGATGAAGGTTATAATAGTAATGATGTGGTTTTTGGTTTTAATTAA 975 0.5005 MQAHPFSYISSCPGSSSSSAFLEPHHHEAVDDEASISLSLGPPGQQQQQQHNPNKATSSSSSSHHPSSSTLHHYQQNPTTSDGHHQRGVTVALHIGLPSSTTTNSPNSAIQTSNKADLHLASAPNIQGQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQQMHMWGHGSQYRKGPESLRGAKPASSMLRLPCYCCAEGCKNNIDHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCDQMGEDEDDEEELELDDDDDDEGYNSNDVVFGFN 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00706 324 MobiDBLite consensus disorder prediction 1 85 - -
Pumo8g00706 324 MobiDBLite consensus disorder prediction 283 317 - -
Pumo8g00706 324 SUPERFAMILY beta-beta-alpha zinc fingers 214 251 IPR036236 -
Pumo8g00706 324 MobiDBLite consensus disorder prediction 39 85 - -
Pumo8g00706 324 MobiDBLite consensus disorder prediction 1 22 - -
Pumo8g00706 324 FunFam Zinc finger protein WIP2 200 282 - -
Pumo8g00706 324 Gene3D Classic Zinc Finger 188 277 - -
Pumo8g00706 324 PANTHER ZINC FINGER PROTEIN WIP2 21 306 IPR043584 GO:0003700|GO:0010468
Pumo8g00706 324 MobiDBLite consensus disorder prediction 292 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00706 Pumo-Chr8 26950700 26952527 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00706 32 301 C2H2 Transcription Factor Family AT1G13290 67.273 1.64e-116 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo8g00706 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g00706 8 26950700 26952527 Pumo8g00706 8 26950700 26952527 ECH