Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00690 ATGCAAGGCTTCAAGACAGCACAACCAAGTTCACAACAACTCTATTGCCACTCCTCCTTCTTGCTTCGGGGAAACGACCCCAACCGAAACCCAACGCGGTTCTCTGATTTTGGGGAGCTTCACCATTCCTCTGCCGTTTTTCATCAAGAAGATGCTGCTGATTTAAGCTCAAGTTCTTTGTTTAGTGTCAAGTCAAGCAATGTTGTTGGTGGCAGTAACATGCAATATGGGACATTGAGCACGAATGTTGGGTCTGCGGAGATTGGTTCAAATGGGGGAGGGTGCATGGATACAGGGCAGCAGCTTATGTACCACAAAGGAGTGACTATGGCTGCCTTGCCTTTGGGGAATGGTCAAGTTGAGAATTGGGCTGATTCAGGCATAGCAGATAATAGCCAACAGACTGATGATACTTCCACAGATATTGACACTGATGATAAAATCCAATGCAATAGAGCTAAGAATGGGACACGAATGGTTGTGCACTCCAAGGATCAGACAAAGGTCAAACCTGAAGATCAGAAGACCCTTCGTAGGCTGGCTCAGAATCGGGAGGCTGCAAGGAAGAGTCGGTTAAGGAAAAAGGCGTATGTACAGCAGTTGGAGAGCAGTCGAGTCAAGCTTGTGCAATTAGAGCAAGAGCTTCAACGAGCACGTCAGCAGGGTATATTTATTGCGACTCCAGGGGATCAAGGACATTTGGCTGTTGGAAATGGTGCCTTAGCATTTGACATAGACTATGCTCACTGGGTTGACGAGCATCAACATCTTCTCAATGATCTAAGAACAGCTGTAAATTCTCAAATGAGTGATAGTGACTTACATATTCTGGTTGATAGTGTCATGGCACATTATAACGAGTTATTTAGGTTAAAGAGCATAGGTGGAAAGGCTGATATATTACACATACTTAATGGGATGTGGAAGTCACCAGTGGAAAGACGTTTTATGTGGCTTGGTGGATTCCGTTCATCCGAACTTCTCAAGATCATCAAGAACCACCTTGAGCCATTAACAGATCAGCAGTTGATGGGAATTTGTAATCTGCAACAGTCTTCCCATCAGGGTGAGGATGCTTTAACTCAAGGCATGGAAGCATTGCAGCAATCTCTTGTAGAAACACTTTCCTCCACTTACCTGGGACCCACCAGTAGTGGAAATGTTGCTGATTACATGGGCCAAATGGCTCTTGCAATGGGAAAGCTTGCTGAACTGGAGAGTTTCCTTCATCAGGCTGACTTCTTGAAGCAACAAACTCTTCAACAGTTGCAACGAATTTTGACAACGCGTCAAACCGCCCGAGCCCTCCTTGTCCAAAATGATTACATTTCAAGACTAAGAGCACTTAGTTCATTATGGTTGGCGCGCCCTAGAGAGTAG 1380 0.4522 MQGFKTAQPSSQQLYCHSSFLLRGNDPNRNPTRFSDFGELHHSSAVFHQEDAADLSSSSLFSVKSSNVVGGSNMQYGTLSTNVGSAEIGSNGGGCMDTGQQLMYHKGVTMAALPLGNGQVENWADSGIADNSQQTDDTSTDIDTDDKIQCNRAKNGTRMVVHSKDQTKVKPEDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRVKLVQLEQELQRARQQGIFIATPGDQGHLAVGNGALAFDIDYAHWVDEHQHLLNDLRTAVNSQMSDSDLHILVDSVMAHYNELFRLKSIGGKADILHILNGMWKSPVERRFMWLGGFRSSELLKIIKNHLEPLTDQQLMGICNLQQSSHQGEDALTQGMEALQQSLVETLSSTYLGPTSSGNVADYMGQMALAMGKLAELESFLHQADFLKQQTLQQLQRILTTRQTARALLVQNDYISRLRALSSLWLARPRE 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00690 459 SMART brlzneu 171 240 IPR004827 GO:0003700|GO:0006355
Pumo8g00690 459 Pfam Seed dormancy control 258 332 IPR025422 GO:0006351|GO:0043565
Pumo8g00690 459 CDD bZIP_HBP1b-like 175 227 - -
Pumo8g00690 459 FunFam BZIP family transcription factor 174 223 - -
Pumo8g00690 459 PANTHER TRANSCRIPTION FACTOR TGA9 119 459 - -
Pumo8g00690 459 Coils Coil 194 221 - -
Pumo8g00690 459 ProSiteProfiles DOG1 domain profile. 240 456 IPR025422 GO:0006351|GO:0043565
Pumo8g00690 459 SUPERFAMILY Leucine zipper domain 175 218 IPR046347 GO:0003700|GO:0006355
Pumo8g00690 459 Gene3D - 174 223 - -
Pumo8g00690 459 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 173 217 IPR004827 GO:0003700|GO:0006355
Pumo8g00690 459 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 178 193 IPR004827 GO:0003700|GO:0006355
Pumo8g00690 459 Pfam bZIP transcription factor 174 213 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00690 Pumo-Chr8 26331846 26336664 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00690 4 459 bZIP Transcription Factor Family AT1G68640 56.170 1.67e-163 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pumo8g00690 DOG1 3.3e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g00690 8 26331846 26336664 Pumo8g00690 8 26331846 26336664 ECH