Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00380 ATGTTGGCCTTCACACTCCTAACGCCCTCGAAGCTCAACCCTTCGCATTTCGTTCCACCCATCACCGTCGCAGCAGAAACTCACCCGAGAAACAGTGTCGTAATCTTTTCCAAATCCAACTCCAAACTCGCTTTCGTTGCCAGGGCCACTGGTAACGGTCGTGACGGCGCCGTCGACGCCACCTCTCCCCCGGGCATTGATGCAGTAACAAGTACATCTTCTGGCCTCGGTGATGGTTACGTGGCCTTGTTTGTTCGTATGTTAGGCCTTGATCGTGATCCTCTGGATAGAGAACAAGCTATAGTTGCCCTCTGGAAATATTCGCTTGGTGGAAAGAAGTGTATAGACACTTTAATGCAGTTTCCTGGTTGTATTAATCTTGTTGTGAACCTCCTCAGATCAGAGTCTAGTTCAGCATGTGAGGCAGCTGCGGGCCTTCTGCGATCACTATCTTCAGTCAATCTATATAGAAATTCTGTAGCTGATAGTGGAGCAATAGAAGAGATAAACAGATTGCTGAGGCAATCTTCCTTGGCTCCTGAGGTAAAGGAGCAGAGTTTGAGTACACTGTGGAATTTATCTGTTGATGAGAAGCTCTGCATTAAAATTTCACAGACTGAGATTCTGCCGTTAGCTATTAAGTACCTTGACGATGAGGATATAAAAGTGAAGGAGGCTGCAGGGGGCATTTTGGCAAATTTAGCATTGAGCCGTGTTAACCACAACATCATGGTTGAAGCAGGTGTTATACCAAAATTGGCAAAGTTCTTAACATCTAATTTGGAAGGATCTAAAGTTATTAGGAAGGAAGCAAGGAATGCATTGCTGGAACTTGTTAAGGACAAGTATTATAGAATTCTTGTTATTGAGGAAGGTCTGGTCCCTGTGCCATTAATTGATGCTGCAGCCTTTAAGTCATTCACCCCAGGCTTACATTTGTGGCCCACGTTACCTGATGGTACAGAAATTGAAAGGACTTCTAGACAGCCATCCAGATATGGTGCTTCGGAATTACTTCTTGGATTAAATATTGATGACAAGAATGCTAACTTAGAGGAAGCAAAAGTCAATGCAATTGTTGGACGAACACAACAGCAATTCCTTGCTCGTGTTGGGGCTTTAGAAAAGGAAGGAAAGACTATGCCTCATTCTGAATGCTCAAATGATCAGAGGTTTTCACTTTTACCTTGGATGGATGGTGTTGCTCGTTTAGTACTGATACTAGAACTGGAAGATAAGTCTGTGATAATAAAGGCTGCAGAGTCAATTGCTACTGCATGTATCAATGAACATATGCGTATTGCATTCAGGGAAGCTGGAGCAATTAAGCATTTAGTAAGGCTTTTGAATTGTGATGATAATGCAGTCCAGTTGGTGGCTACACAAGCTTTGGAAAGGCTGTCTGTTAGCAATATTGTTTGCCGGGTAATTGAATCTGAGGGGGTTTTAGGTCCTTTAGTTAGTATTTTGAAATGCTCAGAGATAACCGGAACCATTACGGAAAAGTCTTTGAACATACTTGCTCGGATATTAGACCCCAGTAAAGAGATGCAATTGAAGGTTTGTATTCCACATCTTGCAGGAAATTTAGAGCTGAGTATTTTTCTATTGATTGTCAAGTACGTTGATTCTTTTCAGTTTTATGATGGACCAGTTAATGGATCTGAAAAGGCATTTGGTGGAGCAAAAAGTGACCGTGTTTCAACCGGGTTTAGTAGCACTGAACAAGCCATATCAAAAACATACACAAGGAATGATATACTGGATTCTGTTTTCATTGCACACCTTGTTGAGATTCTGAAGTCCTCTATTCCCAGTTTACAAGAAAAAGCTGCAATTGTGCTTGAGTTTGTGGCATTGACTGACCCAACTCTGGCCCCAATTATATCATTGGATATTGAATCTGGTCTCAGTTCTGCTTGTCAGCAAAAAATTTTGAAAATTTCAGCTGACATGGAACCTGATGTAGAAGATCAGTTTTCTGAAGCATATGCAATTGAATTTGAAGAAGCTGGTCTTGCAATATCTGCAGCATCCCGGTTATTGACAACACTGCTCGATTGTGAGCAGTTCCGCCACAAAATAAACTCCTCACATTTCATTGATTTGCTTCGCGGAATCCTCAGGTCCAATATTCCTCTCCACAACAAAGATTGGGTGGCTGCTTGCCTAGTTAAACTGAGTTCTCTCTCTGGCTCCATTGCGAGCTTCTATCCAATCAATGTGGAAGTGATGCTCTACGAGACGATCCCAAGACTTCTGGAACAGATCAAAACTTCATTCTCCCCAGAAGCACAGGAAACTGCTGTTGTTGAGCTTAATAGAATAATATCTGAAGGAGTGGTAGATTCCACAGAAGCTATTATTTCTGATGAAGCAATATATTCATTGGTGAAGTTGATTGAAGAAGGCAGTGATAGGGCTGTTGAAGCAAGCTTGGCAGTACTGTATAATCTGAGTCTGGACAGTGAGAACCATTCAGCACTTGTGGCTGCTGGAGCTGTACAGGTCTTGAAAAGAATTGTTCTAGCAAACAGACCACACTGGGAAAGGGCACTTCTTTTACTCAGGATTTTGCAACCTTGA 2586 0.4227 MLAFTLLTPSKLNPSHFVPPITVAAETHPRNSVVIFSKSNSKLAFVARATGNGRDGAVDATSPPGIDAVTSTSSGLGDGYVALFVRMLGLDRDPLDREQAIVALWKYSLGGKKCIDTLMQFPGCINLVVNLLRSESSSACEAAAGLLRSLSSVNLYRNSVADSGAIEEINRLLRQSSLAPEVKEQSLSTLWNLSVDEKLCIKISQTEILPLAIKYLDDEDIKVKEAAGGILANLALSRVNHNIMVEAGVIPKLAKFLTSNLEGSKVIRKEARNALLELVKDKYYRILVIEEGLVPVPLIDAAAFKSFTPGLHLWPTLPDGTEIERTSRQPSRYGASELLLGLNIDDKNANLEEAKVNAIVGRTQQQFLARVGALEKEGKTMPHSECSNDQRFSLLPWMDGVARLVLILELEDKSVIIKAAESIATACINEHMRIAFREAGAIKHLVRLLNCDDNAVQLVATQALERLSVSNIVCRVIESEGVLGPLVSILKCSEITGTITEKSLNILARILDPSKEMQLKVCIPHLAGNLELSIFLLIVKYVDSFQFYDGPVNGSEKAFGGAKSDRVSTGFSSTEQAISKTYTRNDILDSVFIAHLVEILKSSIPSLQEKAAIVLEFVALTDPTLAPIISLDIESGLSSACQQKILKISADMEPDVEDQFSEAYAIEFEEAGLAISAASRLLTTLLDCEQFRHKINSSHFIDLLRGILRSNIPLHNKDWVAACLVKLSSLSGSIASFYPINVEVMLYETIPRLLEQIKTSFSPEAQETAVVELNRIISEGVVDSTEAIISDEAIYSLVKLIEEGSDRAVEASLAVLYNLSLDSENHSALVAAGAVQVLKRIVLANRPHWERALLLLRILQP 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00380 861 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 36 860 - -
Pumo8g00380 861 Gene3D - 653 859 IPR011989 -
Pumo8g00380 861 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 164 197 IPR000225 GO:0005515
Pumo8g00380 861 SUPERFAMILY ARM repeat 78 494 IPR016024 -
Pumo8g00380 861 Gene3D - 78 306 IPR011989 -
Pumo8g00380 861 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 792 834 IPR000225 GO:0005515
Pumo8g00380 861 SMART arm_5 580 620 IPR000225 GO:0005515
Pumo8g00380 861 SMART arm_5 111 152 IPR000225 GO:0005515
Pumo8g00380 861 SMART arm_5 429 469 IPR000225 GO:0005515
Pumo8g00380 861 SMART arm_5 781 821 IPR000225 GO:0005515
Pumo8g00380 861 SMART arm_5 196 236 IPR000225 GO:0005515
Pumo8g00380 861 SMART arm_5 153 195 IPR000225 GO:0005515
Pumo8g00380 861 SMART arm_5 237 280 IPR000225 GO:0005515
Pumo8g00380 861 Pfam Armadillo/beta-catenin-like repeat 429 468 IPR000225 GO:0005515
Pumo8g00380 861 SUPERFAMILY ARM repeat 398 840 IPR016024 -
Pumo8g00380 861 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 440 471 IPR000225 GO:0005515
Pumo8g00380 861 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 123 165 IPR000225 GO:0005515
Pumo8g00380 861 Gene3D - 386 640 IPR011989 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00380 79 309 U-box Gene Family AT2G23140 30.342 8.99e-09 57.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g00380 8 11902007 11909452 Pumo8g00380 8 11902007 11909452 ECH