Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01614 ATGGATTCACAAAACGTGCCAAACTTGAACGGCGTCACTAAGAAGACCAAAGGTCGGCAAAAGATTGAGATGAAGAAGATGAGCAACAAGAGTAAACTTTGGGTGACGTTCTCGAAGCGTCGCACTGGGCTTTTTAAGAAAGCGAGTGAGCTTGCAACCCTCTGCGGAGTGGACGTAGCTGTGATTATGTTCTCACCCGGTAAGCGAGTTTTCTCCTTTGGTAGCCCTAGTGTGGATTCTGTTATCCAACGCTATATGACAGAGGGCCCACCTCCCCTCCTCACCCAGGACCTCAATGAGGCCTATTCCACCGTGGACGAAGGTGAGCTCCACGCTCACCTCAACTGCTTGTCCAACCAAATCACTACAGAGAAGAAGCGTGTAGAGGATTTAAACAATTTGTTAAAGGTCGCGGAGGATCAATTTTGGTGGGCTACCCCTATTGAACACATGAACGATGCCCAACTCGACTTGTACAAAAAGATGTTGGAGGGAGTTAAAGAGACATCTCAAAGAAAAACATGA 525 0.4743 MDSQNVPNLNGVTKKTKGRQKIEMKKMSNKSKLWVTFSKRRTGLFKKASELATLCGVDVAVIMFSPGKRVFSFGSPSVDSVIQRYMTEGPPPLLTQDLNEAYSTVDEGELHAHLNCLSNQITTEKKRVEDLNNLLKVAEDQFWWATPIEHMNDAQLDLYKKMLEGVKETSQRKT 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01614 174 CDD MADS_MEF2_like 18 87 IPR033896 GO:0000977|GO:0045944
Pumo7g01614 174 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Pumo7g01614 174 MobiDBLite consensus disorder prediction 1 15 - -
Pumo7g01614 174 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Pumo7g01614 174 MobiDBLite consensus disorder prediction 1 22 - -
Pumo7g01614 174 Coils Coil 114 141 - -
Pumo7g01614 174 FunFam Agamous-like MADS-box protein AGL62 29 94 - -
Pumo7g01614 174 Gene3D - 29 97 IPR036879 GO:0003677|GO:0046983
Pumo7g01614 174 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Pumo7g01614 174 PANTHER MADS BOX PROTEIN 19 170 - -
Pumo7g01614 174 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Pumo7g01614 174 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Pumo7g01614 174 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Pumo7g01614 174 SUPERFAMILY SRF-like 18 93 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01614 Pumo-Chr7 42045466 42045990 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01614 12 169 Type I MADS-box Gene Family AT5G60440 47.531 7.97e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo7g01614 SRF-TF 5.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01614 - - gmx:102670371 269.626