Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01156 ATGGTTTTTACTTCCATACCAGCGGCTTATCTTGATGCAGCCAACTGGCAGCAACAGCAACCAAATTACCAACCCGGAGGCAGTGGTTCCACCTCTCGGCAGCTGCTGCTTCCACCGCCGCTGCCACCTTCCTCGTCGACGCAGACTCATGGAGCAGGTTCGATGAGGCCAGGATCGATGGCTGATAGGGCAAGGATGGCCAACATGCCAATGCCAGAGGCTGCACTCAAGTGTCCGCGCTGCGAATCCACCAATACCAAATTTTGCTACTTCAACAACTACAGTCTCTCCCAGCCCCGCCACTTCTGCAAGACCTGCAGAAGGTACTGGACCAGAGGCGGCGCCCTAAGGAACGTCCCCGTCGGTGGCGGCTGCGGGAGGAACAAGCGGAGCAAAGGAAGCGGCGGCGGCGGCGGCTCCAAGTCTCCGGCAAGCTCCGACCGCCAGACAGGGAGTGCCAGTTCCACCAACTCGGTCTCTTCCAACAGTGCCTCTGCTGCTGACATAATAGCCCTAGCACGCCCAAATGCCACCACTCAGGTTCATGCCTCCAATGCATGGCTTTGGAGCTGGAGATATGGACCTCAGTTATTATGGCCCAATGGGAGGAGGACTGGTTTGGAGCAATGGAGAATGCCACAGCAGTTTCCCCTCTTGGCTGCTAATTTATACCCTTTTGAAGGCAGTGCTGATGTAAGTGGATATGTGAGGCCAAAGGTTTCAACTTCTGGGGTCATGACTCAGCTGGCTTCAGTGAAAATGGAAGATAGTAGGGAACATAACTTGTCAACCCACTTCTTGGGAAACAATAATCCATTGAGTCAACAATATTGGACCAGTGCTACTTCTGCATCTTGGACAGATATTTCTGGCCTTAGCTCTTCTTCCACTACTAGCAACCAGCTATAG 909 0.5358 MVFTSIPAAYLDAANWQQQQPNYQPGGSGSTSRQLLLPPPLPPSSSTQTHGAGSMRPGSMADRARMANMPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCGRNKRSKGSGGGGGSKSPASSDRQTGSASSTNSVSSNSASAADIIALARPNATTQVHASNAWLWSWRYGPQLLWPNGRRTGLEQWRMPQQFPLLAANLYPFEGSADVSGYVRPKVSTSGVMTQLASVKMEDSREHNLSTHFLGNNNPLSQQYWTSATSASWTDISGLSSSSTTSNQL 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01156 302 Pfam Dof domain, zinc finger 75 130 IPR003851 GO:0003677|GO:0006355
Pumo7g01156 302 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
Pumo7g01156 302 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 57 227 IPR045174 GO:0003700|GO:0006355
Pumo7g01156 302 MobiDBLite consensus disorder prediction 138 160 - -
Pumo7g01156 302 MobiDBLite consensus disorder prediction 17 60 - -
Pumo7g01156 302 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
Pumo7g01156 302 MobiDBLite consensus disorder prediction 17 35 - -
Pumo7g01156 302 MobiDBLite consensus disorder prediction 120 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01156 Pumo-Chr7 25752656 25754142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01156 1 132 C2C2-Dof Transcription Factor Family AT2G37590 60.959 2.06e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo7g01156 zf-Dof 1.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01156 - - pvu:PHAVU_010G013500g 344.354