Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01941 ATGGGAAGAGTGATGGAAAAACCAAGCCAAGATCTCCTTCAGCAGCAGCAACAAGCCCTCAAGTGCCCTCGCTGCGACTCTTCCAACACCAAGTTCTGCTACTACAACAACTACAGTTTGTCACAGCCTAGGCACTTTTGCAAAGCCTGCAAGCGTTACTGGACAAGAGGGGGCACTCTGAGGAACGTTCCCGTTGGTGGTGGCTGCAGAAAAAACAAGCGTGTGAAGCGTCCAAACGGTGCTGATTCTTCTGCTAATAACTCTCCTTCTAGCGCCAATTCAAACCCTCCTTCACAGCCCCACATCGATAGTATTGCCTCTAGCTCCACCACCACAAACCATATAAATATCAACCCTTTGTTTTATGGGAACGGTTGTGATGTGATGAGTAATGTTCCTTTCCCAAGGTTTAATCTTCAGTCTCAGCTGAATGCTCTTGGGTTAGGTTTTTCATTCTGGGGTTAG 465 0.4753 MGRVMEKPSQDLLQQQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPNGADSSANNSPSSANSNPPSQPHIDSIASSSTTTNHININPLFYGNGCDVMSNVPFPRFNLQSQLNALGLGFSFWG 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01941 154 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Pumo6g01941 154 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
Pumo6g01941 154 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Pumo6g01941 154 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 116 IPR045174 GO:0003700|GO:0006355
Pumo6g01941 154 MobiDBLite consensus disorder prediction 79 106 - -
Pumo6g01941 154 MobiDBLite consensus disorder prediction 65 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01941 Pumo-Chr6 31172758 31173222 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01941 20 123 C2C2-Dof Transcription Factor Family AT1G28310 70.192 2.08e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo6g01941 zf-Dof 4.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01941 - - gmx:778105 243.817