Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01940 ATGGAACAAGAAGGAGAAAAAGGGAGAGAGGAGAAAAGACAAGTTCAACGTGCAGCACAACCACAACAACAACAACCTCAGCATCAGAAATGTCCACGCTGCGATTCCATGAACACCAAGTTCTGCTACTTCAACAACTACAGCCTCTCGCAGCCACGGCACTTCTGCAAAACGTGCAAAAGGTACTGGACTCACGGTGGAACCTTCAGGAACATACCCGTTGGTGGCGGTTCGCGCAAAGCGAAGCGTGGCAAAACAACTTCTTCTTCTTCTTCTTCTTCAAATTTGCTCATCACACAGCCACAGCAAAATTTGTTGCCGGTGAGGCCTTCTCCACCACTCACTAGTCCTAATTATTATAATCTTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGAAGTGGATGGTATTTTCCTTTTCATTCTATGAATAACACATCACAGCCTTTCAATCAAAGAGTGGAACTCAGCAAGGAAGCCATAACAGGAGTTGAGGGTGCACAAGTTGAGGAGGAAGAAGAACCAAAGATGGAGTTATAA 537 0.4637 MEQEGEKGREEKRQVQRAAQPQQQQPQHQKCPRCDSMNTKFCYFNNYSLSQPRHFCKTCKRYWTHGGTFRNIPVGGGSRKAKRGKTTSSSSSSSNLLITQPQQNLLPVRPSPPLTSPNYYNLGGGGGGGGGGSGWYFPFHSMNNTSQPFNQRVELSKEAITGVEGAQVEEEEEPKMEL 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01940 178 Pfam Dof domain, zinc finger 27 83 IPR003851 GO:0003677|GO:0006355
Pumo6g01940 178 MobiDBLite consensus disorder prediction 70 97 - -
Pumo6g01940 178 ProSiteProfiles Zinc finger Dof-type profile. 29 83 IPR003851 GO:0003677|GO:0006355
Pumo6g01940 178 MobiDBLite consensus disorder prediction 103 122 - -
Pumo6g01940 178 MobiDBLite consensus disorder prediction 1 32 - -
Pumo6g01940 178 MobiDBLite consensus disorder prediction 1 16 - -
Pumo6g01940 178 MobiDBLite consensus disorder prediction 17 32 - -
Pumo6g01940 178 ProSitePatterns Zinc finger Dof-type signature. 31 67 IPR003851 GO:0003677|GO:0006355
Pumo6g01940 178 MobiDBLite consensus disorder prediction 82 97 - -
Pumo6g01940 178 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 110 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01940 Pumo-Chr6 31150822 31172679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01940 18 144 C2C2-Dof Transcription Factor Family AT5G66940 47.244 1.33e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo6g01940 zf-Dof 1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01940 - - gmx:100814555 173.711