Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo6g01878 | ATGGGCTTGAGTTCTAAGAAGGTTTCTAGCAGTGGACTTGATTGGAAACAAACCTTATTGGAGGCTCAAAACTTGGAACTCCCAAAGCCTAATCTGATGAGGAAACAACAGCAGCAGCAGCAACAACAACAACAACAAACTCAGCCTTCTTCAGAGTCTTTGAAGTGTCCAAGATGTGACTCTACCAACACCAAATTTTGTTACTACAACAACTACAACAAGTCTCAGCCTCGCCATTTCTGCAGGGCTTGCAAGAGGCACTGGACCAAAGGTGGAACTCTACGCAATGTTCCAGTTGGTGGTGGAAGGAAGAACAAGAGGGTCAAAAATTCAATCACTACTCCAACAACAATTCCTTCCACCACCACCACCCCAACCACAACCATCACTTCTACTTGCACTGCCACGGTCACAACCTCAATTGGCATCATGGATGCTATGTTGGGTAGTAGCCACATGACAATCCAAACTCCTCTTGCAGATGATCAGAAAAACATGGCTTCCTCTCTCTACCAAGCTCTAATTCGTCCACCACCTTTGCTGCTACAACAGAATCTGATGAACACATCAAGAGACTTAGAAGGCAAAGATTTTGGTATTGGTATTGGTATTGGTATTGGTATTGGTAATGGTATCTTTCCTAGTTCAACTTTGCCTCTTCCTCCTCAAAGCCAAAGCCTACTCTTCCCTTTCTCAACCTCAAGCAGCTCTTTTGACACCAACCCTTGTTCAGTATCAACCTCTCTTAGATCCTCCAATATTTATAACTATGGGGAGGAGTTTAAAGCAATAGAGGAACCAACCATCAATAGTACTACTACTACTACTATAGTGCCTAGCACAGGTGGTGGCACCAACAACACACATCCATGGGAGATAGCAGCAACAACAAGTGGTGTTGGCTTGGGAACTTCAAACTATTGGAATTGGGAGGATTTTGATTCATTGGTCTCAACTGATCTAAAAGATCCCTGGGATGATTCTGATATCAAACCTTGA | 999 | 0.4354 | MGLSSKKVSSSGLDWKQTLLEAQNLELPKPNLMRKQQQQQQQQQQQTQPSSESLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVKNSITTPTTIPSTTTTPTTTITSTCTATVTTSIGIMDAMLGSSHMTIQTPLADDQKNMASSLYQALIRPPPLLLQQNLMNTSRDLEGKDFGIGIGIGIGIGNGIFPSSTLPLPPQSQSLLFPFSTSSSSFDTNPCSVSTSLRSSNIYNYGEEFKAIEEPTINSTTTTTIVPSTGGGTNNTHPWEIAATTSGVGLGTSNYWNWEDFDSLVSTDLKDPWDDSDIKP | 332 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo6g01878 | 332 | Pfam | Dof domain, zinc finger | 53 | 106 | IPR003851 | GO:0003677|GO:0006355 | |
Pumo6g01878 | 332 | MobiDBLite | consensus disorder prediction | 107 | 128 | - | - | |
Pumo6g01878 | 332 | ProSitePatterns | Zinc finger Dof-type signature. | 56 | 92 | IPR003851 | GO:0003677|GO:0006355 | |
Pumo6g01878 | 332 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 36 | 215 | IPR045174 | GO:0003700|GO:0006355 | |
Pumo6g01878 | 332 | MobiDBLite | consensus disorder prediction | 30 | 56 | - | - | |
Pumo6g01878 | 332 | MobiDBLite | consensus disorder prediction | 95 | 128 | - | - | |
Pumo6g01878 | 332 | MobiDBLite | consensus disorder prediction | 26 | 56 | - | - | |
Pumo6g01878 | 332 | ProSiteProfiles | Zinc finger Dof-type profile. | 54 | 108 | IPR003851 | GO:0003677|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo6g01878 | Pumo-Chr6 | 29484678 | 29486093 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo6g01878 | 42 | 201 | C2C2-Dof Transcription Factor Family | AT1G51700 | 40.741 | 5.55e-31 | 114 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-Dof | Pumo6g01878 | zf-Dof | 1.6e-31 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo6g01878 | - | - | gmx:100818111 | 456.832 |