Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01403 ATGACCACGTATAAATACCACTATTTGCCTCTTCAACACCCTTCATCCAACATCCAAACAAAGCTCAAAACAAACACCAGTCTTTCTTTGCTGTCTCTAAGATCAGCAACGTATCATAACACACACTTCACCATGGTTTTTCCAAAACCCGCTTCTGAGTCTGATCTCTTTCTTCGGTCCAACTTTGCTTCTCGTTATGCCAGGGACTCTCTTCCCAGGTTCAGCATGCCCGAGGACTCCATGCCTAAGGAGGCTGCATACCAGAACATACACGATGAGTTGCAGCTTGATGCAATTCCAAAGCTCAACTTGGCTTCCTTTGTGACCACTTCCATGGAGGAAGAGTGCAACAAACTCATCATGGAATCTATTAACAAGAACTATGTTGACATGGACGAGTATCCTGCCACCACTGACCTTCACAATCGGTGCGTGAACATGATAGCACGTTTGTTCCATGCTGAAATTGGAGAAAATGAGAATGCAATTGGAGCAGGAACTGTTGGATCATCAGAGGCTATAATGCTGGCAGGGCTTGCATTCAAGAAGAAGTGGCAGAACAAGCGCAAGGCAGAGGGCAAGCCTTATGATAAGCCCAACTTGGTAACTGGTTCCAATGTGCAGGTATGTTGGGAGAAATTTGCAAGGTATTTTGAGGTGGAGTTAAGGGAAGTGGAGGTGAGGGAAGGATACTATGTGATGGATCCTGCCAAAGCCGTTGAACTGGTTGATGAGAACACTATTTGTGTGGCTGCAATCTTGGGTTCAACTTACAATGGAGAGTTCGAAGATGTCAAGCTCTTAAATGACTTGTTGCTAGAAAAAAACAAGCAAACTGGATGGGATACGCCTATTCATGTTGATGCTGCTAGTGGTGGGTTTATTGCTCCTTTTCTTTATCCAGAGCTAGAATGGGATTTCAGACTCCCATTGGTGAAGAGCATTAATGTTAGTGGCCACAAGTATGGCCTTGTTTATGCTGGTATTGGTTGGGTTATATGGAGAACCAAGGAAGATTTGCCAGAAGACCTTGTCTTCCATATTAATTACCTTGGAGCTGACCAACCCACCTTCACCCTCAATTTTTCTAAAGGTTCTAGTCAGATCATTGCTCAATATTATCAGCTAATTCGCCTTGGCCAAGAGGGATACCGAAGCATAATGGAGAACTGCAGAGACAATGCAATGGTGCTGAAGGAAAATTTGGAGAGGAGTGGACGCTTTAACATACTCTCAAAAGACAATGGTGTTCCTGTGGTGGCATTTTCTCTCAAGGACAGAAGCCAGTACGATGAGTTCAAGATATCAGAGATGTTGCGCCGCCACGGTTGGATTGTGCCAGCTTATCCAATGCCACCTGGTGCTCAACACATCCATGTGCTCCGTGTGGTGATCAGGGCTGAGTTTACACGCACCCTTGCTGAACGCCTTGTGTTTGACATATACAATGTGCTGCATGAACTCGAAAAACTACACCCCCCCAAAGTGACCAACAACATTAAGGAAGAGAACAGTGCCTTGGTTGCAACTGGTGTCAAGAAAACTGCATTGGATGCACACAGGGAAATCATTGATCAAGAATCAAACAAGCGTCAGAAAATCATGGCTGCCTAG 1614 0.4492 MTTYKYHYLPLQHPSSNIQTKLKTNTSLSLLSLRSATYHNTHFTMVFPKPASESDLFLRSNFASRYARDSLPRFSMPEDSMPKEAAYQNIHDELQLDAIPKLNLASFVTTSMEEECNKLIMESINKNYVDMDEYPATTDLHNRCVNMIARLFHAEIGENENAIGAGTVGSSEAIMLAGLAFKKKWQNKRKAEGKPYDKPNLVTGSNVQVCWEKFARYFEVELREVEVREGYYVMDPAKAVELVDENTICVAAILGSTYNGEFEDVKLLNDLLLEKNKQTGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKEDLPEDLVFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGQEGYRSIMENCRDNAMVLKENLERSGRFNILSKDNGVPVVAFSLKDRSQYDEFKISEMLRRHGWIVPAYPMPPGAQHIHVLRVVIRAEFTRTLAERLVFDIYNVLHELEKLHPPKVTNNIKEENSALVATGVKKTALDAHREIIDQESNKRQKIMAA 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01403 537 Gene3D - 110 404 IPR015421 GO:0003824
Pumo6g01403 537 CDD DOPA_deC_like 103 481 - -
Pumo6g01403 537 Pfam Pyridoxal-dependent decarboxylase conserved domain 77 425 IPR002129 GO:0016830|GO:0019752|GO:0030170
Pumo6g01403 537 Gene3D - 405 491 - -
Pumo6g01403 537 PANTHER GLUTAMATE DECARBOXYLASE 47 531 IPR010107 GO:0004351|GO:0006536|GO:0030170
Pumo6g01403 537 FunFam Glutamate decarboxylase 48 109 - -
Pumo6g01403 537 FunFam Glutamate decarboxylase 405 492 - -
Pumo6g01403 537 Gene3D - 45 109 - -
Pumo6g01403 537 NCBIfam glutamate decarboxylase 60 488 IPR010107 GO:0004351|GO:0006536|GO:0030170
Pumo6g01403 537 SUPERFAMILY PLP-dependent transferases 60 490 IPR015424 -
Pumo6g01403 537 FunFam Glutamate decarboxylase 110 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01403 Pumo-Chr6 18994999 18997556 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01403 45 524 Calmodulin-binding Proteins AT5G17330 76.132 0.0 775
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01403 6 18994999 18997556 Pumo6g01403 6 18994999 18997556 ECH