Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01384 ATGTGTGAACATATAGTCCTCAAACCACAAAAATTAAATTCCACACCCATGTTAGACAACAGTGTTTCTTCTGGTGCACCATCTTCTTCTGATGCCGCCTTTGCATTATCAGAAAATGGGGTGGCTAACAAAAGGAAAAGAAGACCCGCAGGCACACCCGATCCAGATGCTGAGGTTGTGTCTCTCTCACCAACCACCTTGCTGGAATCTGACAGATATGTGTGTGAGATCTGCAACCAAGGGTTCCAGAGGGACCAGAATCTTCAAATGCACAGGAGGAGGCACAAGGTGCCGTGGAAGCTGCTCAAGAGGGAAACACAAGGCCAGAAGAAGAGGGTGTTTGTGTGTCCTGAACCAAGCTGCTTGCACCATGACCCTTGCCATGCCCTTGGGGACCTTGTGGGAATCAAAAAGCACTTCAGAAGGAAACACAGCAATCACAAGCAGTGGGTTTGTGACAAGTGCTCCAAAGGGTATGCTGTTCAATCTGATTACAAGGCACACATCAAAACCTGTGGCACCCGGGGCCATTCTTGTGACTGTGGCCGTGTCTTTTCCAGGGTGGAGAGTTTCATAGAACACCAAGATGCATGCACTGTCCGGCAGCACCGGCCAGAGTTACAAGCACTACAACCTGCATGCTCTTCTAGAACAGCTTCAAGCGCAAGTCCCTCTAGTGAGGCAAATTTTAGCATAGCCCCACCATTGCAAGGACTTCCACTACCAAAACCAGCTGAACAACCAGCAACAGTCTTATTAACTTCAGAGATACACAATAACAAGTCCACCACCTCGCATAACTTAGAACTTCAGCTCCTACCCTCCTCAATAAACTCTCAAGAAAAACAAAATCCAAAGGAAAACTATGGTTTGAAACTTTCAATAGGCTCATGTAGTAATGACAAAGGGAATGAACCAGAGAGAGCATCTTCAGAAGCACATAGGAGCCCACCTGAAAGGAATAATAATAATGTGAGTGACCACTCCACATTGGAAGTGGCAAGGTTGAAGGAGTTTGCAGGAGAGGAACTCAAGTTGGCCATGGCAGAAAAGGCTTATGCAGAAGAGGCTAGGAGAGAGGCCAAACGCCAAATTGAGATGGCTGAACTTGAGTTTGAGAATGCCAAAAGGATAAGGAAACAAGCACAAGCTGAACTTGCAAAGGCTGAAGAGCTGAGAAAGCAAGCCATCAAGAAGATAAGTTCCACTGTTATGGAAATAACATGCCAAACTTGCAAGCAACAGTTCCAGTCTTCAACTGTTGGAGAAGAAACCTCCATTGTGATGAGTTACATGTCCTCAGCCACCACAGAAGGAGAAGCAGAATGA 1329 0.4635 MCEHIVLKPQKLNSTPMLDNSVSSGAPSSSDAAFALSENGVANKRKRRPAGTPDPDAEVVSLSPTTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQGQKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCSKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRQHRPELQALQPACSSRTASSASPSSEANFSIAPPLQGLPLPKPAEQPATVLLTSEIHNNKSTTSHNLELQLLPSSINSQEKQNPKENYGLKLSIGSCSNDKGNEPERASSEAHRSPPERNNNNVSDHSTLEVARLKEFAGEELKLAMAEKAYAEEARREAKRQIEMAELEFENAKRIRKQAQAELAKAEELRKQAIKKISSTVMEITCQTCKQQFQSSTVGEETSIVMSYMSSATTEGEAE 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01384 442 SUPERFAMILY beta-beta-alpha zinc fingers 72 170 IPR036236 -
Pumo6g01384 442 MobiDBLite consensus disorder prediction 14 36 - -
Pumo6g01384 442 Coils Coil 344 399 - -
Pumo6g01384 442 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 30 413 IPR031140 -
Pumo6g01384 442 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Pumo6g01384 442 Gene3D Classic Zinc Finger 51 116 - -
Pumo6g01384 442 MobiDBLite consensus disorder prediction 290 329 - -
Pumo6g01384 442 Gene3D Classic Zinc Finger 135 212 - -
Pumo6g01384 442 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Pumo6g01384 442 MobiDBLite consensus disorder prediction 14 59 - -
Pumo6g01384 442 MobiDBLite consensus disorder prediction 211 244 - -
Pumo6g01384 442 MobiDBLite consensus disorder prediction 211 232 - -
Pumo6g01384 442 FunFam protein indeterminate-domain 12-like 52 120 - -
Pumo6g01384 442 SMART c2h2final6 150 177 IPR013087 -
Pumo6g01384 442 SMART c2h2final6 114 144 IPR013087 -
Pumo6g01384 442 SMART c2h2final6 73 95 IPR013087 -
Pumo6g01384 442 Pfam Zinc finger, C2H2 type 73 95 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01384 Pumo-Chr6 18653850 18656994 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01384 38 442 C2H2 Transcription Factor Family AT2G01940 57.240 2.17e-156 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo6g01384 zf-C2H2 0.0041 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01384 6 18653850 18656994 Pumo6g01384 6 18653850 18656994 ECH