Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01087 ATGGCTCAAGTACAAAGTGGCCAAGCTAGTAGTGAAGGGATTAAACTGTTTGGGACAACGATTATGTTGTATGGTAGAGAAAGAAAAGAAGATAAAAACGAGAGTGAAGATGGCACAGAAGAGATGAAGAGGCCTGATAAGATCATACCATGCCCAAGATGCAAGAGCATGGAAACCAAGTTCTGCTACTTCAATAACTACAACGTTAATCAGCCCAGGCATTTCTGCAAGGGCTGCCAGAGGTACTGGACTGCCGGTGGGGCCCTTCGCAACGTGCCGGTAGGAGCCGGACGACGAAAGGCCAAACCGCCGTGCCATGACCCTACTGGGTTTATGGACGGTGGACTTGCATCCACCGTCCAACAACAGTTTGGTTTGGAGGAGAGGTTGGCTTTGGATGAATGGCATGTTGCCACCATGGCTCACGGTGATTTCCGGCAGCTTTTTCCATCTAAAAGGCGGAGGATGAACTCAGCATGA 480 0.4958 MAQVQSGQASSEGIKLFGTTIMLYGRERKEDKNESEDGTEEMKRPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKAKPPCHDPTGFMDGGLASTVQQQFGLEERLALDEWHVATMAHGDFRQLFPSKRRRMNSA 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01087 159 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677|GO:0006355
Pumo6g01087 159 PANTHER CYCLIC DOF FACTOR 2 30 102 IPR045174 GO:0003700|GO:0006355
Pumo6g01087 159 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677|GO:0006355
Pumo6g01087 159 Pfam Dof domain, zinc finger 47 102 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01087 Pumo-Chr6 14462977 14464583 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01087 11 158 C2C2-Dof Transcription Factor Family AT2G34140 57.317 8.52e-56 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo6g01087 zf-Dof 3.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01087 - - vra:106779806 270.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01087 6 14462977 14464583 Pumo6g01087 6 14462977 14464583 ECH