Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03925 ATGGAAGACATAGGTCCGAATTCATGCACAATGGCAGTGGTAGAGAAGAAAGCAAGACCTCAAGAGCAACTGAATTGTCCAAGGTGCAGTTCAAGCAACACAAAGTTCTGTTATTACAACAACTACAGCCTCACACAGCCCAGATACTTCTGCAAGACTTGTAGAAGGTATTGGACAGAAGGTGGTTCTCTGAGAAACGTTCCCGTTGGAGGTGGGTCTAGGAAGAACAAGAAGATCACCACATCAAAGGTTCCTGACTTGAATCCACCAATTTCTTCCCAAAACCCTAAAATGCAAGGACTCCATGACCTTAATTTGGCTTTTCCTGCTGCTATGTCTCCATATGTTGAGATGCCAAAACTTGAAATTGGTGGTGGTGACAGTAGTACCAGTTTCCACCATAACCCTTCTTCTGCTCCAACTTCTCTTTCAGCAGTTGAGCTACTACGGTCTGGCATGGCTTCTAGGGGTTTGAATCCTTATAATAATGTTGTTCCTAATTCCTTGATGTCAAGCTCAGACTCCCTTTACACACCTGGCTATCCCATGCAGGAAGTTAAACCAAACCTTAGCTTTTCAGTTGATGGGTATGGAAATAGATCATATGAAAATGGTAGTGGTGGGAGGCTTTTGTTCCCTTTTGGAGACATCAAGCACCTTTCTGCAGGTGTTGAAGTGGAACACAATAAAGAACAAGGAAATAGTAATTCAACTGGATATTGGACTGGAATCATTGGTGAAGGGTCGTCATGGTAA 756 0.4312 MEDIGPNSCTMAVVEKKARPQEQLNCPRCSSSNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKITTSKVPDLNPPISSQNPKMQGLHDLNLAFPAAMSPYVEMPKLEIGGGDSSTSFHHNPSSAPTSLSAVELLRSGMASRGLNPYNNVVPNSLMSSSDSLYTPGYPMQEVKPNLSFSVDGYGNRSYENGSGGRLLFPFGDIKHLSAGVEVEHNKEQGNSNSTGYWTGIIGEGSSW 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03925 251 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 140 IPR045174 GO:0003700|GO:0006355
Pumo5g03925 251 MobiDBLite consensus disorder prediction 75 96 - -
Pumo5g03925 251 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Pumo5g03925 251 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
Pumo5g03925 251 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
Pumo5g03925 251 MobiDBLite consensus disorder prediction 69 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03925 Pumo-Chr5 89388629 89390632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03925 12 251 C2C2-Dof Transcription Factor Family AT3G61850 46.786 5.54e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo5g03925 zf-Dof 4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03925 - - gmx:100775598 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03925 5 89388629 89390632 Pumo7g00631 7 10308932 10311228 PCT