Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03271 ATGGAGAGAGGATGGAAGGCTAATAATGTTGAGATTTCACCAAATTGTCCTAGGTGTGGTTCTACCAATACCAAGTTCTGCTACTACAATAACTACAGTTCAACTCAACCACGGTACTTTTGCAAAGGTTGCAGAAGGTACTGGACCAAAGGAGGATCCCTACGCAACGTGCCTGTTGGTGGTGGCTGCCGCAAAAGTAGAAGGGGTAAGTATAATAAGACCTTAACACAAGCCAATAACCCAGTTGGGCATTCCTGA 258 0.4496 MERGWKANNVEISPNCPRCGSTNTKFCYYNNYSSTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRGKYNKTLTQANNPVGHS 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03271 85 Pfam Dof domain, zinc finger 15 68 IPR003851 GO:0003677|GO:0006355
Pumo5g03271 85 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 12 74 IPR045174 GO:0003700|GO:0006355
Pumo5g03271 85 ProSitePatterns Zinc finger Dof-type signature. 16 52 IPR003851 GO:0003677|GO:0006355
Pumo5g03271 85 ProSiteProfiles Zinc finger Dof-type profile. 14 68 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03271 Pumo-Chr5 81870146 81870403 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03271 5 70 C2C2-Dof Transcription Factor Family AT3G52440 84.058 9.61e-38 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo5g03271 zf-Dof 6.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03271 - - gmx:100812522 176.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03271 5 81870146 81870403 Pumo5g03271 5 81870146 81870403 ECH
Pumo5g03271 5 81870146 81870403 Pumo3g03008 3 54435294 54436214 PCT